G1780563


Basic Information

Item Value
gene id G1780563
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15393233 ~ 15393449 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2038737
GACTGTGGAGAAGCAGATCCAGCAGTATGCAAAGAATGTGATCAAGACATACAATACTTACACCACAAAGCTGCCAGGGAGGAAATTGGAGGTGGTCTTGGCCCCATCTTTGGAGGAGTGAGACCAAGTTACTTGGTTCAAGATGACATTGGTGTCCAGATGCCCAATTACGTCAGCAGTAGATCTCAGGACGTCAAGGCGCTGAACGAGACGTGGT

Function

NR:

description
coiled-coil domain-containing protein 173 isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2038737 True 217 lncRNA 0.49 1 15393233 15393449

Neighbor

gene id symbol gene type direction distance location
mettl5 mettl5 coding upstream 34353 15354532 ~ 15358880 (+)
LOC110501461 tlk1 coding upstream 244902 15122642 ~ 15148331 (+)
mettl8 mettl8 coding upstream 276080 15104378 ~ 15117153 (+)
LOC110501456 LOC106581769 coding upstream 327431 15045334 ~ 15065802 (+)
LOC110501453 LOC106581766 coding upstream 423232 14967670 ~ 14970001 (+)
fastkd1 fakd1 coding downstream 8343 15401792 ~ 15415120 (+)
lrp2a lrp2 coding downstream 109611 15503060 ~ 15572970 (+)
abcb11a LOC106581787 coding downstream 197271 15590720 ~ 15607266 (+)
spc25 spc25 coding downstream 216798 15610247 ~ 15614355 (+)
stk39 stk39 coding downstream 254464 15647913 ~ 15683499 (+)
G1780483 NA non-coding upstream 93771 15278765 ~ 15299462 (+)
G1780482 NA non-coding upstream 115930 15276395 ~ 15277303 (+)
G1780479 NA non-coding upstream 119507 15273296 ~ 15273726 (+)
G1780477 NA non-coding upstream 122044 15270980 ~ 15271189 (+)
G1780476 NA non-coding upstream 122539 15269322 ~ 15270694 (+)
G1780580 NA non-coding downstream 44240 15437689 ~ 15437905 (+)
G1780583 NA non-coding downstream 47477 15440926 ~ 15441170 (+)
G1780584 NA non-coding downstream 48479 15441928 ~ 15442170 (+)
G1780585 NA non-coding downstream 51257 15444706 ~ 15445739 (+)
G1780491 NA other upstream 45567 15291362 ~ 15347666 (+)
G1780353 NA other upstream 349590 15038099 ~ 15043643 (+)
G1779636 NA other upstream 489973 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1313494 14079497 ~ 14079739 (+)
LOC110501417 LOC106581898 other upstream 2605655 12756352 ~ 12787590 (+)
G1780575 NA other downstream 31262 15424711 ~ 15433820 (+)
G1781293 LOC106586198 other downstream 446155 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 669308 16062757 ~ 16063401 (+)
G1781813 NA other downstream 878940 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1612585 17006034 ~ 17041673 (+)

Expression


Co-expression Network