G1780580


Basic Information

Item Value
gene id G1780580
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15437689 ~ 15437905 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2038761
atctacatgtaggtaggggtaaagataagaaacaacgagtagcagcagtgtaaaaacaaagggggagggtgtcaatgtaaatagtccagtggccatttgattaattgttcaacagtcttatggcttgggggtagaagctgttaaggcgccttttggacctagacttggcactctggtactgcttgccgtgcggtagcagagagaacagtctatgact

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2038761 True 217 lncRNA 0.46 1 15437689 15437905

Neighbor

gene id symbol gene type direction distance location
fastkd1 fakd1 coding upstream 22569 15401792 ~ 15415120 (+)
mettl5 mettl5 coding upstream 78809 15354532 ~ 15358880 (+)
LOC110501461 tlk1 coding upstream 289358 15122642 ~ 15148331 (+)
mettl8 mettl8 coding upstream 320536 15104378 ~ 15117153 (+)
LOC110501456 LOC106581769 coding upstream 371887 15045334 ~ 15065802 (+)
lrp2a lrp2 coding downstream 65155 15503060 ~ 15572970 (+)
abcb11a LOC106581787 coding downstream 152815 15590720 ~ 15607266 (+)
spc25 spc25 coding downstream 172342 15610247 ~ 15614355 (+)
stk39 stk39 coding downstream 210008 15647913 ~ 15683499 (+)
LOC110501488 NA coding downstream 421261 15859166 ~ 15861044 (+)
G1780563 NA non-coding upstream 44240 15393233 ~ 15393449 (+)
G1780483 NA non-coding upstream 138227 15278765 ~ 15299462 (+)
G1780482 NA non-coding upstream 160386 15276395 ~ 15277303 (+)
G1780479 NA non-coding upstream 163963 15273296 ~ 15273726 (+)
G1780583 NA non-coding downstream 3021 15440926 ~ 15441170 (+)
G1780584 NA non-coding downstream 4023 15441928 ~ 15442170 (+)
G1780585 NA non-coding downstream 6801 15444706 ~ 15445739 (+)
G1780625 NA non-coding downstream 42441 15480346 ~ 15481005 (+)
G1780575 NA other upstream 3869 15424711 ~ 15433820 (+)
G1780491 NA other upstream 90023 15291362 ~ 15347666 (+)
G1780353 NA other upstream 394046 15038099 ~ 15043643 (+)
G1779636 NA other upstream 534429 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1357950 14079497 ~ 14079739 (+)
G1781293 LOC106586198 other downstream 401699 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 624852 16062757 ~ 16063401 (+)
G1781813 NA other downstream 834484 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1568129 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1858048 17295953 ~ 17296359 (+)

Expression


Co-expression Network