G1780583


Basic Information

Item Value
gene id G1780583
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15440926 ~ 15441170 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2038764
acatatagcTTACTAATATATGAGTGAAATTTGTTTCGATTTAGAATGGGCCCCAACAAAAGACATGTAATTTGTagcctaaactcagcaaaaaaagaaacgtccctttttcaggaccctgtctttcaaagataatttgtaaaaatccaaataacttcacagatcttcattgtaaagggttcaaacactgtttcccatgcttgttcaatgaaccataaacaattaatgaacatgcacctacggaa

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2038764 True 245 lncRNA 0.34 1 15440926 15441170

Neighbor

gene id symbol gene type direction distance location
fastkd1 fakd1 coding upstream 25806 15401792 ~ 15415120 (+)
mettl5 mettl5 coding upstream 82046 15354532 ~ 15358880 (+)
LOC110501461 tlk1 coding upstream 292595 15122642 ~ 15148331 (+)
mettl8 mettl8 coding upstream 323773 15104378 ~ 15117153 (+)
LOC110501456 LOC106581769 coding upstream 375124 15045334 ~ 15065802 (+)
lrp2a lrp2 coding downstream 61890 15503060 ~ 15572970 (+)
abcb11a LOC106581787 coding downstream 149550 15590720 ~ 15607266 (+)
spc25 spc25 coding downstream 169077 15610247 ~ 15614355 (+)
stk39 stk39 coding downstream 206743 15647913 ~ 15683499 (+)
LOC110501488 NA coding downstream 417996 15859166 ~ 15861044 (+)
G1780580 NA non-coding upstream 3021 15437689 ~ 15437905 (+)
G1780563 NA non-coding upstream 47477 15393233 ~ 15393449 (+)
G1780483 NA non-coding upstream 141464 15278765 ~ 15299462 (+)
G1780482 NA non-coding upstream 163623 15276395 ~ 15277303 (+)
G1780584 NA non-coding downstream 758 15441928 ~ 15442170 (+)
G1780585 NA non-coding downstream 3536 15444706 ~ 15445739 (+)
G1780625 NA non-coding downstream 39176 15480346 ~ 15481005 (+)
G1781292 NA non-coding downstream 395843 15837013 ~ 15838727 (+)
G1780575 NA other upstream 7106 15424711 ~ 15433820 (+)
G1780491 NA other upstream 93260 15291362 ~ 15347666 (+)
G1780353 NA other upstream 397283 15038099 ~ 15043643 (+)
G1779636 NA other upstream 537666 14902795 ~ 14903260 (+)
G1779170 NA other upstream 1361187 14079497 ~ 14079739 (+)
G1781293 LOC106586198 other downstream 398434 15839604 ~ 15848595 (+)
G1781423 LOC106581799 other downstream 621587 16062757 ~ 16063401 (+)
G1781813 NA other downstream 831219 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1564864 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1854783 17295953 ~ 17296359 (+)

Expression


Co-expression Network