Gene
RNA
| Item | Value |
|---|---|
| gene id | G1781137 |
| gene name | lrp2 |
| gene type | misc |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 15567503 ~ 15568534 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| symbol | description |
|---|---|
| lrp2 | Enables calcium ion binding activity and chaperone binding activity. Involved in several processes, including positive regulation of protein kinase B signaling; receptor-mediated endocytosis; and response to leptin. Located in apical plasma membrane. Part of receptor complex. Implicated in Donnai-Barrow syndrome and autoimmune thyroiditis. |
| description |
|---|
| unnamed protein product |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2039382 | False | 564 | TUCP | 0.55 | 4 | 15567503 | 15568534 |
| TU2039383 | True | 361 | lncRNA | 0.55 | 3 | 15567929 | 15568534 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| zgc:172182 | LOC106581782 | coding | downstream | 66180 | 15497172 ~ 15501749 (-) |
| col28a2a | LOC106581781 | coding | downstream | 87415 | 15446052 ~ 15480514 (-) |
| bbs5 | bbs5 | coding | downstream | 134047 | 15424718 ~ 15433882 (-) |
| klhl41a | LOC106586209 | coding | downstream | 144127 | 15414900 ~ 15423802 (-) |
| LOC110501472 | ppig | coding | downstream | 166223 | 15394975 ~ 15401706 (-) |
| rdh1 | LOC106581784 | coding | upstream | 8537 | 15577071 ~ 15580959 (-) |
| dhrs9 | LOC106581786 | coding | upstream | 12785 | 15581319 ~ 15586397 (-) |
| nostrin | nostrin | coding | upstream | 45878 | 15614412 ~ 15618681 (-) |
| cers6 | cers6 | coding | upstream | 54923 | 15623457 ~ 15645629 (-) |
| b3galt1b | LOC106581793 | coding | upstream | 115889 | 15684423 ~ 15825221 (-) |
| G1781106 | lrp2 | non-coding | downstream | 29307 | 15534033 ~ 15538622 (-) |
| G1781027 | NA | non-coding | downstream | 179959 | 15387764 ~ 15387970 (-) |
| G1781025 | NA | non-coding | downstream | 181478 | 15385933 ~ 15386451 (-) |
| G1781021 | NA | non-coding | downstream | 188244 | 15379432 ~ 15379685 (-) |
| G1780923 | NA | non-coding | downstream | 297800 | 15269756 ~ 15270129 (-) |
| G1781192 | NA | non-coding | upstream | 103689 | 15672223 ~ 15678026 (-) |
| G1781203 | NA | non-coding | upstream | 121255 | 15689789 ~ 15690167 (-) |
| G1781260 | NA | non-coding | upstream | 216487 | 15785021 ~ 15796656 (-) |
| G1781449 | NA | non-coding | upstream | 259965 | 15828499 ~ 15891725 (-) |
| G1781526 | NA | non-coding | upstream | 395470 | 15964004 ~ 15965985 (-) |
| G1778224 | NA | other | downstream | 2237434 | 13279280 ~ 13330495 (-) |
| G1778140 | efnb2 | other | downstream | 2394950 | 13168780 ~ 13172979 (-) |
| LOC110501411 | LOC106581904 | other | downstream | 2943235 | 12620582 ~ 12624860 (-) |
| G1777441 | LOC106581914 | other | downstream | 3297815 | 12268217 ~ 12270114 (-) |
| G1777286 | NA | other | downstream | 3526307 | 12041108 ~ 12041622 (-) |
| LOC110501514 | dapl1 | other | upstream | 1488588 | 17057104 ~ 17063550 (-) |
| G1783895 | LOC106581829 | other | upstream | 2300995 | 17869529 ~ 17903951 (-) |
| LOC110501547 | LOC106586143 | other | upstream | 3607033 | 19175567 ~ 19179266 (-) |
| G1785753 | NA | other | upstream | 3752654 | 19321188 ~ 19321859 (-) |
