XLOC_037105 (crygs3)


Basic Information

Item Value
gene id XLOC_037105
gene name crygs3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22351443 ~ 22366295 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073036
CTTTAACAGGATTCCATGATGCGTCTGACGGAAGCAATTTTCAGTGAGCCTAGACCCATATCACTGAAGATTGTCTTTTATGAGGACAGAAACTTTCAGGGACGTTCCTTTGAGTGCAGCCTGGACTGCCCAGAGCTGTCGTCCCACTTCACCCGCTGTAACTCCATCCGAGTCGAGAATGGGGCCTGGGTTTTGTATGAGCGTCCAAACTACATGGGCTTTCAGTACATCCTAACTAGGGGAGAATATCCTGATTATCAGCGCTGGATGGGCTACAATGACACTATAAGGTCTTGCCGTATGGTGCGAAATCATACTGGCTCTTTCCGTATCCGTCTGTATGAGCGGCCTGACTTCCAGGGTCAGACCATGGAGAGCAGTGAGGACTGGCCCTCTCTCTATGACCGCTTCCGTCAGCGCGAGGTCCATTCCTGTAATGTTTTGGATGGAGCCTGGATTTTCTTTGAGCATCCAAACTACAGGGGACGTCAGTACTTGTTGGAGAAAGGCGAGTATCGCTGCTTCACTGACTGGAATGCCATGCATCCTACTGTCGGCTCCATCCGCCGTATTCAGGACTTTTAGGTC
>TCONS_00073039
TGATGATGCAATTGGTGTAGCCATTCATATAACAATGATTTGCCTGGCAGAGCAACTCAATGTGAAACATATAAATCTCGCTCATTGCCCTTTTGATTCACAGCATACCTCAAATGCAGGAATGAAATTAGCCAAAAACATGGACAGAATGGGAAAAGTATGAAATATCTTGCATGCATAACCTGGCTCTGCTGTTTACTCTTTGGTTTAACTTTGTTTCTGCATCTTCTTCCACACAGATTGTCTTTTATGAGGACAGAAACTTTCAGGGACGTTCCTTTGAGTGCAGCCTGGACTGCCCAGAGCTGTCGTCCCACTTCACCCGCTGTAACTCCATCCGAGTCGAGAATGGGGCCTGGGTTTTGTATGAGCGTCCAAACTACATGGGCTTTCAGTACATCCTAACTAGGGGAGAATATCCTGATTATCAGCGCTGGATGGGCTACAATGACACTATAAGGTCTTGCCGTATGGTGCGAAATCATACTGGCTCTTTCCGTATCCGTCTGTATGAGCGGCCTGACTTCCAGGGTCAGACCATGGAGAGCAGTGAGGACTGGCCCTCTCTCTATGACCGCTTCCGTCAGCGCGAGGTCCATTCCTGTAATGTTTTGGATGGAGCCTGGATTTTCTTTGAGCATCCAAACTACAGGGGACGTCAGTACTTGTTGGAGAAAGGCGAGTATCGCTGCTTCACTGACTGGAATGCCATGCATCCTACTGTCGGCTCCATCCGCCGTATTCAGGACTTTTAGGTCTTTCAGTGTGTAGTTGTTTGTtccttaaatatttaataaaaaatgacacTGAGCTCACCTGAATCTCCTGTCTCctcgtttttattttgtttctctcACAATCAGCTGGTCTTCAC
>TCONS_00073040
AATGTGAAACATATAAATCTCGCTCATTGCCCTTTTGATTCACAGCATACCTCAAATGCAGGAATGAAATTAGCCAAAAACATGGACAGAATGGGAAAAATTGTCTTTTATGAGGACAGAAACTTTCAGGGACGTTCCTTTGAGTGCAGCCTGGACTGCCCAGAGCTGTCGTCCCACTTCACCCGCTGTAACTCCATCCGAGTCGAGAATGGGGCCTGGGTTTTGTATGAGCGTCCAAACTACATGGGCTTTCAGTACATCCTAACTAGGGGAGAATATCCTGATTATCAGCGCTGGATGGGCTACAATGACACTATAAGGTCTTGCCGTATGGTGCGAAATCATACTGGCTCTTTCCGTATCCGTCTGTATGAGCGGCCTGACTTCCAGGGTCAGACCATGGAGAGCAGTGAGGACTGGCCCTCTCTCTATGACCGCTTCCGTCAGCGCGAGGTCCATTCCTGTAATGTTTTGGATGGAGCCTGGATTTTCTTTGAGCATCCAAACTACAGGGGACGTCAGTACTTGTTGGAGAAAGGCGAGTATCGCTGCTTCACTGACTGGAATGCCATGCATCCTACTGTCGGCTCCATCCGCCGTATTCAGGACTTTTAGGTCTTTCAGTGTGTAGTTGTTTGTtccttaaatatttaataaaaaatgacacTGAGCTCACCTGAA

Function

symbol description
crygs3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

GO:

id name namespace
GO:0002088 lens development in camera-type eye biological_process
GO:0007601 visual perception biological_process
GO:0005212 structural constituent of eye lens molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-050223-3 Predicted to be a structural constituent of eye lens. Predicted to be involved in lens development in camera-type eye and visual perception. Is expressed in lens.

Ensembl:

ensembl_id ENSDARG00000025943

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073036 False 588 mRNA 0.51 3 22351443 22366179
TCONS_00073039 False 874 mRNA 0.46 2 22364997 22366295
TCONS_00073040 True 681 mRNA 0.47 3 22365055 22366242

Neighbor

gene id symbol gene type direction distance location
XLOC_037104 NA coding upstream 37826 22312733 ~ 22313617 (+)
XLOC_037103 crygm2e coding upstream 270454 22080122 ~ 22080989 (+)
XLOC_037102 zgc:153846 coding upstream 333139 22017368 ~ 22018304 (+)
XLOC_037101 crygm1 coding upstream 338624 22011912 ~ 22012819 (+)
XLOC_037100 si:dkey-57a22.15 coding upstream 346610 22003942 ~ 22004833 (+)
XLOC_037107 dgkg coding downstream 9036 22375331 ~ 22618558 (+)
XLOC_037108 BX548053.3 coding downstream 210650 22576945 ~ 22577059 (+)
XLOC_037109 etv5a coding downstream 265377 22631672 ~ 22649297 (+)
XLOC_037110 NA coding downstream 276091 22642386 ~ 22642685 (+)
XLOC_037111 si:dkey-189g17.2 coding downstream 290681 22656976 ~ 22672826 (+)
XLOC_037095 CR536604.1 non-coding upstream 365447 21984109 ~ 21985996 (+)
XLOC_037089 NA non-coding upstream 585708 21761696 ~ 21765735 (+)
XLOC_037086 BX649266.2 non-coding upstream 854744 21495873 ~ 21496699 (+)
XLOC_037078 pla1a non-coding upstream 1125311 21214940 ~ 21226132 (+)
XLOC_037116 NA non-coding downstream 622646 22988941 ~ 22998060 (+)
XLOC_037119 CR394542.1 non-coding downstream 679972 23046267 ~ 23046385 (+)
XLOC_037122 NA non-coding downstream 759861 23126156 ~ 23128231 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_09263668_09270542 CRYGS4, CRYGS3 coding CI01000009 null 9263625 ~ 9272243 (-)