G1781333


Basic Information

Item Value
gene id G1781333
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 15953553 ~ 15972242 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2039597
tttttgaccagggctcagaGGGCTGACTGAACACCGTCTTTAGAGAAGCTTTAGAATGGAGGGTAGTACAGAGCGGGACATTCCCCCAATGTTAATTTTGAGCAATACTTCTCTTTCTACAAAATATGATAAACCACACCTTAACTTTCCCTGCACATCTATCTGCCTTGTCATTTTTCCTTACCCAAGCTGGTTAGGAAACTTTTGAAAAGTAATGGGTGCGATTATGGAGAATTTCTATTGGTGCATTGCTTTTTATATTCCTTAAAACATTGTCAGGATTACTTGTGTTTGGCATGACTCCCATAGCACTCTGGCGTCTTTTATCAGTACCCACAATACTTACAATTGGCAGGAAAGTAACTTGAACTCTAGGTTACACCAGGTTTGACAGATTGCAAGGCAAACTTGATGGTAATTGTACATGAAGTGCAATTGATGGGACTTGCTTTAACTCATTAAAATTATTTTTGTGATAGTGGTAGAACTTTGAAAAGtgtaactttactatttaaagcAAAGCACTTACATATAGTCACGGTTGAATGTAGTAAAATAATTTGTCTGATTTACTTTGATAGACTACTATATCAACCATATTACTTTGGATTGTGAGTCAGTTAGatcacaaaaatgtctaaactacaGTTGTTGTGTGTGAAAATGAAAACAAGAATGACAAGACAAAGTGATCTTCTGTCATAAAATAGGAATAAAAGCGAGGATCATGTGGACAACACCTTTAGGAAAGCAAAGCAACTCTCATTCAAGCTGTGGGTTTCAGATCGATGCGCAACCTACTTTTGTAAAACGTTCAGTGTAAATGAAGTTTGATTTTAGTTGAATGATGATGTAATGATTCAAAAGTTTTAGGCTATTGAATGTTGACCTATTGATAGCTAGCTGTTGTTGTATCTAATAAATTCACTCTTCAGGCTAACAGTGATCACTGGAAAGtacatttcctgaagaaaatgtggTGTGTTGGCTAGCATGTTTTAAAGAATGTATGGTTTTGAAATACGTTATAGCAGTGGTAGTTTTTGCTGTGGTATTGGTGGTGACTGTTTATAGTTGACAAAGTAGGTAGATGAAAAGTTAGGACAGCCTGAACATATCAAAGTTGGTGCTGGTGTATCTAGCTTGAACAATTCAAAGGTTACTTTTGGTGAGTTTTATATTATGCAAATGTCTATCGTTTTAGTCTGAAAAAAAACTTGAACGTAGGATAGCCTGAACATTTGAATGTTGGTTTGGTGTCTTTAACTTCAATGCTTCAATAATTATTGTTGGTGAGTTATTTTAtgcacatttacagtgccttcagaaagtatccataccccttgacttaatccacattttgttgtgttacagcctgaattcaaaattgattacaaAAATGTTTTCTCacccatcaacacacaataccccgtaatgacatagtgaaaacatattgaaaataaatgacagaaacatctcatttccataattattcacacccctcaaTATTTTgcagaagcacctttgacagggattttagctgtgagtctttctggttaagtctcttAGAGCTTTTctcacctggattgtgcaaaagttgcccattattcttaaaaaaaaatcttcaagctctgtcaaattggttgctgatttttgctagacaaccatttccaggtcttgccatagattttcaagtagatttaagtcaaaactgtaactcggccactcaggaacattcactatcttcttggtaagcaactccagtgtagatttggccttgggtTTTAGGTTATCGTCCTGCTGAAAGATTATTTAATATCCCAGTGTCGGTTGAAAAGCacactgaaccaagttttcctctaagattctgcctgtgcttagctccattccgcttcctttttatcctgaaaaacttcccagttcttaacaattacaagcatacccataacatgatgcagc

Function

NR:

description
Transposable element Tcb1 transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2039597 True 1959 lncRNA 0.36 2 15953553 15972242

Neighbor

gene id symbol gene type direction distance location
LOC110501488 NA coding upstream 92509 15859166 ~ 15861044 (+)
stk39 stk39 coding upstream 270054 15647913 ~ 15683499 (+)
spc25 spc25 coding upstream 339198 15610247 ~ 15614355 (+)
abcb11a LOC106581787 coding upstream 346287 15590720 ~ 15607266 (+)
lrp2a lrp2 coding upstream 380646 15503060 ~ 15572970 (+)
LOC110501495 cobll1 coding downstream 145944 16118186 ~ 16151990 (+)
LOC110501496 LOC106581801 coding downstream 179997 16152239 ~ 16217207 (+)
LOC110501497 LOC106581802 coding downstream 356536 16328778 ~ 16338520 (+)
LOC110502057 LOC106581803 coding downstream 471794 16444036 ~ 16494451 (+)
ifih1 mda5 coding downstream 529219 16501461 ~ 16519607 (+)
G1781292 NA non-coding upstream 114826 15837013 ~ 15838727 (+)
G1780625 NA non-coding upstream 472548 15480346 ~ 15481005 (+)
G1780585 NA non-coding upstream 507814 15444706 ~ 15445739 (+)
G1781365 LOC106581799 non-coding downstream 76611 16048853 ~ 16049113 (+)
G1781415 NA non-coding downstream 77552 16049794 ~ 16050057 (+)
G1781416 LOC106533619 non-coding downstream 77821 16050063 ~ 16050759 (+)
G1781417 LOC106581799 non-coding downstream 80842 16053084 ~ 16053332 (+)
G1781419 NA non-coding downstream 82704 16054946 ~ 16055968 (+)
G1781293 LOC106586198 other upstream 104958 15839604 ~ 15848595 (+)
G1780575 NA other upstream 519733 15424711 ~ 15433820 (+)
G1780491 NA other upstream 605887 15291362 ~ 15347666 (+)
G1780353 NA other upstream 909910 15038099 ~ 15043643 (+)
G1779636 NA other upstream 1050293 14902795 ~ 14903260 (+)
G1781423 LOC106581799 other downstream 90515 16062757 ~ 16063401 (+)
G1781813 NA other downstream 300147 16272389 ~ 16273110 (+)
G1782390 NA other downstream 1033792 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1323711 17295953 ~ 17296359 (+)
G1783622 NA other downstream 1769515 17741757 ~ 17742435 (+)

Expression


Co-expression Network