G1781365 (LOC106581799)


Basic Information

Item Value
gene id G1781365
gene name LOC106581799
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16048853 ~ 16049113 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2039630
ACAGGATAACAACAATAAAGTCAAATACATTCCACCCAATGGTGAAGTAGTATTGGCGGAGTGAGAACATCTTCAGAATACACTCTCCGGTAAACATGACAATAAACACCAGGTTGATCTTATAGAGAATTCCATCCATGTCGTCCGTCTGGTCGTCCGTCTCCACCATCATGGTGACCATATTAAGGCATATGAGAATCATGATGACAATGTCGAAGGCTTGCTTTGTAATGAAATCAAAGACATATCCTTGAAACTTGT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2039630 True 261 lncRNA 0.40 1 16048853 16049113

Neighbor

gene id symbol gene type direction distance location
csrnp3 LOC106581794 coding upstream 60735 15922382 ~ 15988118 (+)
LOC110501488 NA coding upstream 187809 15859166 ~ 15861044 (+)
stk39 stk39 coding upstream 365354 15647913 ~ 15683499 (+)
spc25 spc25 coding upstream 434498 15610247 ~ 15614355 (+)
abcb11a LOC106581787 coding upstream 441587 15590720 ~ 15607266 (+)
LOC110501495 cobll1 coding downstream 69073 16118186 ~ 16151990 (+)
LOC110501496 LOC106581801 coding downstream 103126 16152239 ~ 16217207 (+)
LOC110501497 LOC106581802 coding downstream 279665 16328778 ~ 16338520 (+)
LOC110502057 LOC106581803 coding downstream 394923 16444036 ~ 16494451 (+)
ifih1 mda5 coding downstream 452348 16501461 ~ 16519607 (+)
G1781333 NA non-coding upstream 76611 15953553 ~ 15972242 (+)
G1781292 NA non-coding upstream 210126 15837013 ~ 15838727 (+)
lrp2a lrp2 non-coding upstream 475883 15503060 ~ 15572970 (+)
G1780625 NA non-coding upstream 567848 15480346 ~ 15481005 (+)
G1781415 NA non-coding downstream 681 16049794 ~ 16050057 (+)
G1781416 LOC106533619 non-coding downstream 950 16050063 ~ 16050759 (+)
G1781417 LOC106581799 non-coding downstream 3971 16053084 ~ 16053332 (+)
G1781419 NA non-coding downstream 5833 16054946 ~ 16055968 (+)
G1781420 NA non-coding downstream 6859 16055972 ~ 16056260 (+)
G1781293 LOC106586198 other upstream 200258 15839604 ~ 15848595 (+)
G1780575 NA other upstream 615033 15424711 ~ 15433820 (+)
G1780491 NA other upstream 701187 15291362 ~ 15347666 (+)
G1780353 NA other upstream 1005210 15038099 ~ 15043643 (+)
G1779636 NA other upstream 1145593 14902795 ~ 14903260 (+)
G1781423 LOC106581799 other downstream 13644 16062757 ~ 16063401 (+)
G1781813 NA other downstream 223276 16272389 ~ 16273110 (+)
G1782390 NA other downstream 956921 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1246840 17295953 ~ 17296359 (+)
G1783622 NA other downstream 1692644 17741757 ~ 17742435 (+)

Expression


Co-expression Network