Gene
RNA
| Item | Value |
|---|---|
| gene id | G1781416 |
| gene name | LOC106533619 |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 16050063 ~ 16050759 (+) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| sodium channel protein type 8 subunit alpha, partial |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2039702 | True | 544 | lncRNA | 0.38 | 2 | 16050063 | 16050759 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| csrnp3 | LOC106581794 | coding | upstream | 61945 | 15922382 ~ 15988118 (+) |
| LOC110501488 | NA | coding | upstream | 189019 | 15859166 ~ 15861044 (+) |
| stk39 | stk39 | coding | upstream | 366564 | 15647913 ~ 15683499 (+) |
| spc25 | spc25 | coding | upstream | 435708 | 15610247 ~ 15614355 (+) |
| abcb11a | LOC106581787 | coding | upstream | 442797 | 15590720 ~ 15607266 (+) |
| LOC110501495 | cobll1 | coding | downstream | 67427 | 16118186 ~ 16151990 (+) |
| LOC110501496 | LOC106581801 | coding | downstream | 101480 | 16152239 ~ 16217207 (+) |
| LOC110501497 | LOC106581802 | coding | downstream | 278019 | 16328778 ~ 16338520 (+) |
| LOC110502057 | LOC106581803 | coding | downstream | 393277 | 16444036 ~ 16494451 (+) |
| ifih1 | mda5 | coding | downstream | 450702 | 16501461 ~ 16519607 (+) |
| G1781415 | NA | non-coding | upstream | 6 | 16049794 ~ 16050057 (+) |
| G1781365 | LOC106581799 | non-coding | upstream | 950 | 16048853 ~ 16049113 (+) |
| G1781333 | NA | non-coding | upstream | 77821 | 15953553 ~ 15972242 (+) |
| G1781292 | NA | non-coding | upstream | 211336 | 15837013 ~ 15838727 (+) |
| G1781417 | LOC106581799 | non-coding | downstream | 2325 | 16053084 ~ 16053332 (+) |
| G1781419 | NA | non-coding | downstream | 4187 | 16054946 ~ 16055968 (+) |
| G1781420 | NA | non-coding | downstream | 5213 | 16055972 ~ 16056260 (+) |
| G1781422 | LOC106581799 | non-coding | downstream | 10622 | 16061381 ~ 16062519 (+) |
| G1781424 | LOC106586196 | non-coding | downstream | 13127 | 16063886 ~ 16064370 (+) |
| G1781293 | LOC106586198 | other | upstream | 201468 | 15839604 ~ 15848595 (+) |
| G1780575 | NA | other | upstream | 616243 | 15424711 ~ 15433820 (+) |
| G1780491 | NA | other | upstream | 702397 | 15291362 ~ 15347666 (+) |
| G1780353 | NA | other | upstream | 1006420 | 15038099 ~ 15043643 (+) |
| G1779636 | NA | other | upstream | 1146803 | 14902795 ~ 14903260 (+) |
| G1781423 | LOC106581799 | other | downstream | 11998 | 16062757 ~ 16063401 (+) |
| G1781813 | NA | other | downstream | 221630 | 16272389 ~ 16273110 (+) |
| G1782390 | NA | other | downstream | 955275 | 17006034 ~ 17041673 (+) |
| G1783087 | NA | other | downstream | 1245194 | 17295953 ~ 17296359 (+) |
| G1783622 | NA | other | downstream | 1690998 | 17741757 ~ 17742435 (+) |
