G1781422 (LOC106581799)


Basic Information

Item Value
gene id G1781422
gene name LOC106581799
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16061381 ~ 16062519 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2039713
GTACAAACAACAGAAAACAAGCAGATTTGCATAACATCACTGTCCTTTTTTTAAAGCTCATAACGTCGCTGTCCATTTTTCAAATCCTTAACCTAGATCATCACTTGATTTCAAACTATGTACAAGAATCTGAGACTGTGAACTACTTCCACATTGTTCCACATAGAATCATGCTCACCTCTTTGCTTTCCTCTATGTCCGAGGAATCGCTGCTGAAGTCCTCAGTGTTGAGGTCCGACTCTCCCAAAGCGATGGGCACTGTGACGGTCAGGCTGGCGTTGTGGATGAACGGCATATAGTCAGTGTTGTCATTCATTATGTACTTCCCTGCTGCATTGCTGCACACCCCCACTCCCAACCCACTGGTGGCGCCATTGCCATCCTTTATGTAATCGGGGTCTTTCATGATCTCCACAGTGGTGTGGTTGGAGTTCCAGTTGGTCCCCATGGTTTTGTGGAGGTCATCCAGGGTCGTGTCCTCGTTCAggctcctcttcttcttcctcagaCAGATGCTTTGGAAAGAGCGGCGCACCAAGGCCTTGAGGAAGGCGACGCCCTGGTGGATGCGGTCTATGGCCACCGTCAGATTGTTCATCTCGCTGTCATCATCCGTGGCCGCCAGGTTATCAGCACTGAACGAGCTCAGCAGCAAGGCCAGGAACAG
>TU2039711
CTTTGCTTTCCTCTATGTCCGAGGAATCGCTGCTGAAGTCCTCAGTGTTGAGGTCCGACTCTCCCAAAGCGATGGGCACTGTGACGGTCAGGCTGGCGTTGTGGATGAACGGCATATAGTCAGTGTTGTCATTCATTATGTACTTCCCTGCTGCATTGCTGCACACCCCCACTCCCAACCCACTGGTGGCGCCATTGCCATCCTTTATGTAATCGGGGTCTTTCATGATCTCCACAGTGGTGTGGTTGGAGTTCCAGTTGGTCCCCATGGTTTTGTGGAGGTCATCCAGGGTCGTGTCCTCGTTCAggctcctcttcttcttcctcagaCAGATGCTTTGGAAAGAGCGGCGCACCAAGGCCTTGAGGAAGGCGACGCCCTGGTGGATGCGGTCTATGGCCACCGTCAGATTGTTCATCTCGCTGTCATCATCCGTGGCCGCCAGGTTATCAGCACTGAACGAGCTCAGCAGCAAGGCCAGGAACAG
>TU2039709
GCTCTGACCAGCCACCTCCATACAGTCCCACATGGTCTCGATCCACTCCCCACACAGCACCCGGAACACAATCAGGAAGGAGTGGAAGAAGTCATGCATGTGCCACCGGGGCAGTGTGCAGTCTGtagagatcttacacacacagtctctgtaGCTCTTCCCAAAAAGCTGCATGCCCACCACGGCGAAGATGAAGACAATGATGGCCAGTACGAGGGTGAGATTACCCAAGGCCCCCACTGAGTTACCAATGATCTTGATCAGCTTGTTCAGTGTGGGCCAAGACTTGGCCAGTTTGAATACTCTCAGC
>TU2039710
GCTCTGACCAGCCACCTCCATACAGTCCCACATGGTCTCGATCCACTCCCCACACAGCACCCGGAACACAATCAGGAAGGAGTGGAAGAAGTCATGCATGTGCCACCGGGGCAGTGTGCAGTCTGtagagatcttacacacacagtctctgtaGCTCTTCCCAAAAAGCTGCATGCCCACCACGGCGAAGATGAAGACAATGATGGCCAGTACGAGGGTGAGATTACCCAAGGCCCCCACTGAGTTACCAATGATCTTGATCAGCTTGTTCA

Function

NR:

description
sodium channel protein type 2 subunit alpha-like isoform X6

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2039713 False 667 lncRNA 0.50 1 16061381 16062047
TU2039711 False 487 lncRNA 0.55 1 16061561 16062047
TU2039709 False 310 lncRNA 0.53 1 16062210 16062519
TU2039710 True 272 lncRNA 0.53 1 16062210 16062481

Neighbor

gene id symbol gene type direction distance location
csrnp3 LOC106581794 coding upstream 73263 15922382 ~ 15988118 (+)
LOC110501488 NA coding upstream 200337 15859166 ~ 15861044 (+)
stk39 stk39 coding upstream 377882 15647913 ~ 15683499 (+)
spc25 spc25 coding upstream 447026 15610247 ~ 15614355 (+)
abcb11a LOC106581787 coding upstream 454115 15590720 ~ 15607266 (+)
LOC110501495 cobll1 coding downstream 55667 16118186 ~ 16151990 (+)
LOC110501496 LOC106581801 coding downstream 89720 16152239 ~ 16217207 (+)
LOC110501497 LOC106581802 coding downstream 266259 16328778 ~ 16338520 (+)
LOC110502057 LOC106581803 coding downstream 381517 16444036 ~ 16494451 (+)
ifih1 mda5 coding downstream 438942 16501461 ~ 16519607 (+)
G1781420 NA non-coding upstream 5121 16055972 ~ 16056260 (+)
G1781419 NA non-coding upstream 5413 16054946 ~ 16055968 (+)
G1781417 LOC106581799 non-coding upstream 8049 16053084 ~ 16053332 (+)
G1781416 LOC106533619 non-coding upstream 10622 16050063 ~ 16050759 (+)
G1781415 NA non-coding upstream 11324 16049794 ~ 16050057 (+)
G1781424 LOC106586196 non-coding downstream 1367 16063886 ~ 16064370 (+)
G1781425 NA non-coding downstream 2614 16065133 ~ 16065426 (+)
G1781426 NA non-coding downstream 4152 16066671 ~ 16067472 (+)
G1781431 NA non-coding downstream 9933 16072452 ~ 16072853 (+)
G1781432 LOC106581799 non-coding downstream 10854 16073373 ~ 16073617 (+)
G1781293 LOC106586198 other upstream 212786 15839604 ~ 15848595 (+)
G1780575 NA other upstream 627561 15424711 ~ 15433820 (+)
G1780491 NA other upstream 713715 15291362 ~ 15347666 (+)
G1780353 NA other upstream 1017738 15038099 ~ 15043643 (+)
G1779636 NA other upstream 1158121 14902795 ~ 14903260 (+)
G1781423 LOC106581799 other downstream 238 16062757 ~ 16063401 (+)
G1781813 NA other downstream 209870 16272389 ~ 16273110 (+)
G1782390 NA other downstream 943515 17006034 ~ 17041673 (+)
G1783087 NA other downstream 1233434 17295953 ~ 17296359 (+)
G1783622 NA other downstream 1679238 17741757 ~ 17742435 (+)

Expression


Co-expression Network