G1782605 (LOC106581803)


Basic Information

Item Value
gene id G1782605
gene name LOC106581803
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 16492387 ~ 16494412 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2040980
GTAATTAGCTAAACCCAATTGTACTCTTTACATTGTGTCTGTAATCACTTCTGCGCAGAAACATTCCAATTATTTGTAGTGGAGTGTAAAAAGCaagacatgttgaaaatgtgtcaaaaacataatttaaaaaatagaCCAACTAATTGTTTCTTTATCCCCCTAGTTTGTGTGAATCAGGCCAAATTTATGCAAAAGATTACTAAGGACTTTACCACGCATTTACTTTCCATGCAATACCTAGGCTACTGATTTCAGGAAATGTAAAAATAAACATTCATTAGTTGGACTATTGTGATTATACGTTTACTGTCTGTTACTTTGTTATACGTGTCCTTGTTTGGAAATGGACTTAATGTGACACACTCATTCTATAATTATAATACAGTAATCATGGAACCTAAATCCTTCCATCGCTTGAACGTTTTAGTGCTTTGGACATGCAAGTATACTGTCTTGTCTTCATTCATTTATATTGAAGAGAGAGCAAGGGCATTTGTTATCCCCtgctgtaaatactacagtacacCATTGAACATGGATTGTAAATGCATGCACAAAATAATTGCATTGCTGAATATTCAAGCAGCTTTTAGTGCAAAAGACATTTCCCCCACGAACAGATATGGTGGACCAAATCTTTAGAAAAAAGGTCAACCAACTGGAAGTTCTTCAAAAGTAAATGCTTCAGTTTAATTTTATTGCTCCCATAGCTTCAGGACAAACGTACGCTACCACTAACATTTCAATGGCACCCCATCCTTTAATGTATTccttaataaataaaaatacatttacatatttGTACATGTCTTTCCTTATAAGATTGTATTCATGTGCATTTACTATGAGAGCAGAATACATTGGAAAACAATGTGATTGAGTTTATGTTGAGAATGAGCAGAGTGAGGCTACATAAAGCTACTGATTTGATTTTTGGATTTAGTTATAGGCACAATACACCATCTATATTTCCTGGGCCTATTGATAAGCTAACATTAGCTCCATGTGCTACATAACATGTAATACTGTGTATGCATAATCATTTAGTAAAATAAACTGCAATCTAAAACAAAGTCTGAAGTATATGGACAATGCCTTTATCATACAGCTACTTGTGGTTCAAATAAGCCgtgcaaaaaaagaaaagaaacatACTATGGTGAAAGTAAATGTACTACCTTGTCAACCTACCAAAATCACACTTGCCTGTCAGAGGTCTGAATCAAAGCTACCATGCAACGAAAACAATCTGTCATGCAAATCATTTCAGGAGGAAAACTACAAGATACTTCACATATTGCAATGCAATTAAGAGAGAATGAAACCCTGAGTCACACTTCAGAGAAGACAGGCAAAATGAAAATAAGAGATCTTGCTCTATGGCCTTGGAGGTCCTGGGTCTGAGACTGGCCTATGGAGTCCTGTGTTGGGAGATGAGTCTGATAGTGGAGAGGAGTCCTCAATAGGAAGAAAGAGAGATTTGGAATGCTGATGCCCTGcatgtttgttctgtgtgtttcttTGTACAAGCAGTACTGTAAGGCTGTCCTCTATGGGTGAATCATCCATGTAAGCCAAGCCTGACAGCGAGTCTTTGGATTCCTGATGACTCCTCTCCAAGTTGAGTTCAGGACTCTGATAATGTAAAAGAAataacagcaaacacacacacacacCATTAGAAAGTGCCTCAGAATCCTTGGAGCTGGTCATCACTTTTCAAAAATGATATCCATTCCGTGTTTAAAAAGTCTGAGTCCTTGATTTCCATTGTCTGTTTGTTCTGTGGAAATCAACAGTTCAGTACGTACTTGTGATGATGAATGGCTGAAGCAATGGCTGCTGGTCAAAGCAGCGATTGGCTGGACCATAACAGCTGGCCTTTGATAGTCTGGACTAGCAGTCACAGTGCTGTAGGCAGGAGGTCCCAGTGTGGACTGCCTCTGCAGGAGCTGCAGGATGGTCTGAATATCTGATGTCATCTGGGACTCCA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2040980 True 1996 lncRNA 0.38 2 16492387 16494412

Neighbor

gene id symbol gene type direction distance location
LOC110501493 LOC106581799 coding downstream 403773 16045523 ~ 16088614 (-)
ttc21b ttc21b coding downstream 471320 16002547 ~ 16021067 (-)
galnt3 galnt3 coding downstream 491915 15990139 ~ 16000472 (-)
LOC110501489 LOC106581797 coding downstream 534888 15946465 ~ 15957499 (-)
xirp2b LOC106586198 coding downstream 622342 15837019 ~ 15870045 (-)
LOC110501500 LOC106581805 coding upstream 46843 16541255 ~ 16596674 (-)
LOC110501502 tbr1 coding upstream 127413 16621825 ~ 16626574 (-)
LOC110501503 tank coding upstream 153482 16647894 ~ 16654144 (-)
LOC110501509 tanc1 coding upstream 373911 16868323 ~ 17049285 (-)
LOC110501514 dapl1 coding upstream 562692 17057104 ~ 17063550 (-)
G1782604 LOC106581803 non-coding downstream 1497 16488914 ~ 16490890 (-)
G1782599 LOC106581803 non-coding downstream 12709 16478202 ~ 16479678 (-)
G1782024 NA non-coding downstream 83608 16408370 ~ 16408779 (-)
G1782006 NA non-coding downstream 95584 16396462 ~ 16396803 (-)
G1781988 NA non-coding downstream 105196 16386905 ~ 16387191 (-)
G1782657 NA non-coding upstream 107241 16601653 ~ 16601976 (-)
G1782685 NA non-coding upstream 137522 16631934 ~ 16632329 (-)
G1782702 NA non-coding upstream 152925 16647337 ~ 16647525 (-)
G1782704 NA non-coding upstream 164888 16659300 ~ 16659805 (-)
G1782708 NA non-coding upstream 167585 16661997 ~ 16662206 (-)
b3galt1b LOC106581793 other downstream 667173 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 923853 15567503 ~ 15568534 (-)
G1778224 NA other downstream 3161892 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 3319408 13168780 ~ 13172979 (-)
LOC110501411 LOC106581904 other downstream 3867693 12620582 ~ 12624860 (-)
G1783895 LOC106581829 other upstream 1375117 17869529 ~ 17903951 (-)
LOC110501547 LOC106586143 other upstream 2681155 19175567 ~ 19179266 (-)
G1785753 NA other upstream 2826776 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 3161870 19655763 ~ 19666201 (-)

Expression


Co-expression Network