XLOC_037111 (si:dkey-189g17.2)


Basic Information

Item Value
gene id XLOC_037111
gene name si:dkey-189g17.2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 22656976 ~ 22672826 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073054
GGAAAAAACGAATCGTGTTATCGCGGAGACGAGTCATCATCACTAAACAGTGTTTCAGAAAATGTGGTACCCTCCAGCTGCCGTTGTTCCTTTCTTCGAGTCACATTCAGTCACATATGAGGATCGCAGTGCCATCGCCAAATGGCACTTCCTTCCCTTTGACCAGCGTGCAGTGAACGAGATGACCGGCTTTCACAATGAAACCCTGTATACCGATGTTAGGAGGAGGTGTATGTTGATGAGGTCACTGTTTGAACTTGTCTTCGCCAATAATTATCTGGAGCTCACAAACCCAAAGTTGCTTGGATGGTTCTTATACTTAACAGCAGAGGACAGGACCTTAATACAAAACGAAGGAGGGCTTCTgtcttttttaaagaaacatccaGAACTTGGAGTAACCAGACAGTATGTTTATGTAAAAGcaaaaCCCAAAGGAAACTACGTTCCCCCTCCTACAACTATGGCATCAAACGATTCCAGGTACCCAACATTTTATGGTTCATCTGGGTGTCAAAACTGTGGGACTAGTTGTCCATTTGGTACCAAGAAGTGCACCCGT
>TCONS_00073055
GTctgaactaattaaaaaaaacttttttgactTCTCACAGAAGCTTAAAATTACCTAATCATAATTATTCGGCTAATAATGACAcaaataactgtttatttattactcTCCTGGCGTCCGGTGTCTAATCGATAATGTTTCAGAAAATGTGGTACCCTCCAGCTGCCGTTGTTCCTTTCTTCGAGTCACATTCAGTCACATATGAGGATCGCAGTGCCATCGCCAAATGGCACTTCCTTCCCTTTGACCAGCGTGCAGTGAACGAGATGACCGTGTTGCTGAATTTCTTGCACATCTCTCAAGGCTTTCACAATGAAACCCTGTATACCGATGTTAGGAGGAGGTGTATGTTGATGAGGTCACTGTTTGAACTTGTCTTCGCCAATAATTATCTGGAGCTCACAAACCCAAAG
>TCONS_00073056
CTGAGGCGGAAAAACATGTGCCCGACGAACCTCTGTCGGTGCTTTGTTGTTGATAATAACCGGTGACCTTTTCTTAATTTTGATCATTTAGTGTTTCAGAAAATGTGGTACCCTCCAGCTGCCGTTGTTCCTTTCTTCGAGTCACATTCAGTCACATATGAGGATCGCAGTGCCATCGCCAAATGGCACTTCCTTCCCTTTGACCAGCGTGCAGTGAACGAGATGACCGTGTTGCTGAATTTCTTGCACATCTCTCAAGGCTTTCACAATGAAACCCTGTATACCGATGTTAGGAGGAGGTGTATGTTGATGAGGTCACTGTTTGAACTTGTCTTCGCCAATAATTATCTGGAGCTCACAAACCCAAAGTTGCTTGGATGGTTCTTATACTTAACAGCAGAGGACAGGACCTTAATACAAAACGAAGGAGGGCTTCTgtcttttttaaagaaacatccaGAACTTGGAGTAACCAGACAGTATGTTTATGTAAAAGcaaaaCCCAAAGGAAACTACGTTCCCCCTCCTACAACTATGGCATCAAACGATTCCAGGTACCCAACATTTTATGGTTCATCTGGGTGTCAAAACTGTGGGACTAGTTGTCCATTTGGTACCAAGAAGTGCACCCGTTGTGGTGTTCACATTGTGATTTCACAGGACAAAATCAGTGTGTCAGAGAATGAAAAACAACTTCAGCTGCTCCCAAACAGCCTAAAAGAAGAGCTAAATGTTTTCCAAACTTCCCAAAGTAATGTTGAAATGCAAAATATCCATTTAGGTTGCACGCAAAGCACCCTAAACACTAGGAGCAAACAGAGAAGCCCTGAAGCGCATCCTCATTTCTACAGTAAAGGAATGTGTTCTCATGCCCAGTGCCTCTCTCAGCTGTGGCAGGAAGTAGAAAGCAGGGAAGATGCcaaacattttaaggacacatCAGCCCAAGCGAGCTTCTGCCTCGATATGGAGCTTGATGTGCAGAGTCAGGTTCAGAGAAATGACAACACCCAAAATAACCAAAATCAATCATATAATCCCACTGAAGAAAATGACCACAATGTGGACCAGGAAACCATGCCAGAATACTACAGTTTTAGTAGCATCAGCTTAGACCACACTGCATGGAGCAATGGCAGCCAGAGTGCAGAGACAGGGTTCAATGATTCAATCACTGCTACCAAAGGCAGTACAGAACTCTCAGATGAACTATCAGAGGCTGCCAACAGCACTGCTGCAAACTCTACCGATTGTTTCTCTTGTGTCAGCAATTCATTTGAGCTGGCTGAAGAGTCAGGAGACTGTCTTGACTCAAGATATGAGCAACAGATAAACAAGAGCAATGTGGGTTCCTCACCAAAATCCAAATCTAGCGCTTCTGTCTATGTGGACCAAATGATAGATGCCTGTGGTGATTTCAGAGCTTTTTTTACATCTACTTGTGCAACAAAGACTGATCAGACCTTCCAGGTGAAAAATGTCGCTACTGACACAGACTTGCCTGCTGTCAGCCATGAAAAAGATACTCAGACCATGCGAATGACCACATCTGATAAGAACACCATTACTGAAGTTTATATGTCAGACTTGGATGTCCTCACTGAGGAATTTATAAAGCTAAAAGAGACTGAGAAGGGGTTGAAACAGATGAAGAGCATGAATGCAAGGAGATTGTGTGGCTGTGACTGTGCCCAGCGAGTAAGAAAAGCAGAGCTAAATCTTCTTGCTCTTCAGTTTGTCATGTGCCAACAGCACTGCTGGAGACGCTACTTCACCTCCCCACTTGGTGAAAGTGCTTATCAGGGTACCGAGGCACTGCCAGACAGCATAGCAGAAACTCTTAAAACACTACAGAAGGATTACCATGAGATGAGACAACAGATTCTGGCTGGTACTCCTCTGGATGATCTTGCGCCCCTATCAGTAAACTCTGAGAAGATATCTACAGGGACAAATTACAGCCCATCATCGGTTCTTGCGGCCCATTTAGACTGTGCAGGAAGTACCATTGCGAGTGACCACAAAGTGGATGAAGAACATACAGCGATGAAGGTGCCTCCCAGTGAAGTTTGTCAGGACATTGAAACTGCTCCGGATGAAGCAAAAAATGAATGCAGCAAAAGAGATAAAGCCCTATTCATCCTGCCAAAGCAGACAAGAATTTCTACTGAACCAAAGACTGTAGGTGCCAACAAGGATTTGAATGGCAGCGAAGCTTGGTTTGATGCAGAGGAGGAACTTGGGTTTCCAAATCAAGATGGAAACATGGAGAAACCGAATAAAATGAGAGAAACTATGAGGCACAAAATGGAGACAAAAGggaCGGATGAGGATGTGTCAAAGCAAAGCTCCCTCTTGTGCATCACTTGCTTGCCAGGCAATATCACCGAGCATGAAGTACTACTTTGGTTTGAGAAGTACAATCCAACAAATGTCTGCATCTCGGCTTTCAGCAACAATACAAGGGCAGCTATTGTTTATCTCAAGAGCTATATTGATGCCAAAGCAGCAGTTGAAGATCTAAATGGACGTTCCCTTCAAGGTCATGCTGTCCAGGTGGTGCATCTCTCTGGGACTGTTTCAGCTGATCTTAAACCAAGTGATCTGTCCCACAGCGCCTCAGAAAGCCATAAAGAAGACACTGCAGGGGATGAACTGAGAACAAAAAATTTAACCTACGGTTCATCACATGGAGGGCCGCGCTGCAGTCTGGAAAGGTTGACCAACGTGTGCAACTCGCCCACAGCCTCTGGAACATGTGTGCCACAGCACTACGCCACCATGGGAAGCTTCGACACAATCATGGCCCGGCTGTCAGAGCGCCACCCAAACGTTGCCCGGCAGAGGATCGTAGATGCCCTGCTGGAATTGCGGGCCAAGCATCAGGGCTTCCTCAGTGGTCTTCCGTTGAGATCTATTGTAGATATGACCTCTGAGCTTCTCACACAGACCTCCAGTTCCGCTCGTGTTTGAGTTTGTGGTATTTTAAgcaagttaaagggatagttcacccaaaaatttacattttgtttttaattgtttctaaattgaggtattttgaagaattctGGAAACCAGTAGCCAATGATTGGGTAggaaaaatattatggaagttgatggctactggtttccaacattcttccttTGTTTGTTCCTTTGGCCTTGTAAATAGTTCCCTCGCCAGTTATATTTTTGCAGGTAACTTTAGTGCTACGTTCAACCATTTCGTTGTAGTTCTTGTTCATGACACTTCCTTCACAGAGTGAACTCTGACCTTAGGCAATGTTGGAATTAATGAGAAAGTTGTTACATTTATTTCAGATTTCCAACTTTGATATAACAGCATTTTTGAGTTACCCTTGTGTTTCCTAAATAAAACTGTTTTCTTGTGCTTTCTG
>TCONS_00073057
CACGATAGAAAAGAATCTGTGAAAAAAAACTCGAAGATGATCTAGAAAATTCACGTATTATTTTTTACACTCTGTTGCTGAATTTCTTGCACATCTCTCAAGGCTTTCACAATGAAACCCTGTATACCGATGTTAGGAGGAGGTGTATGTTGATGAGGTCACTGTTTGAACTTGTCTTCGCCAATAATTATCTGGAGCTCACAAACCCAAAGTTGCTTGGATGGTTCTTATACTTAACAGCAGAGGACAGGACCTTAATACAAAACGAAGGAGGGCTTCTgtcttttttaaagaaacatccaGAACTTGGAGTAACCAGACAGTATGTTTATGTAAAAGcaaaaCCCAAAGGAAACTACGTTCCCCCTCCTACAACTATGGCATCAAACGATTCCAGGTACCCAACATTTTATGGTTCATCTGGGTGTCAAAACTGTGGGACTAGTTGTCCATTTGGTACCAAGAAGTGC

Function

GO:

id name namespace
GO:0045171 intercellular bridge cellular_component
GO:0005737 cytoplasm cellular_component
GO:0042803 protein homodimerization activity molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-030131-5562 Predicted to enable protein homodimerization activity. Predicted to be located in cytoplasm and intercellular bridge. Orthologous to human RBM44 (RNA binding motif protein 44).

Ensembl:

ensembl_id ENSDARG00000069758

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073054 False 562 mRNA 0.44 7 22656976 22662734
TCONS_00073055 False 413 mRNA 0.41 4 22657026 22658842
TCONS_00073056 False 3398 mRNA 0.44 18 22657221 22672826
TCONS_00073057 True 470 processed_transcript 0.40 6 22658229 22662728

Neighbor

gene id symbol gene type direction distance location
XLOC_037109 etv5a coding upstream 7679 22631672 ~ 22649297 (+)
XLOC_037110 NA coding upstream 14291 22642386 ~ 22642685 (+)
XLOC_037107 dgkg coding upstream 38418 22375331 ~ 22618558 (+)
XLOC_037108 BX548053.3 coding upstream 79917 22576945 ~ 22577059 (+)
XLOC_037105 crygs3 coding upstream 290681 22351443 ~ 22366295 (+)
XLOC_037112 itgb5 coding downstream 4677 22677503 ~ 22748015 (+)
XLOC_037113 tnfaip6 coding downstream 91409 22764235 ~ 22779813 (+)
XLOC_037114 rif1 coding downstream 108075 22780901 ~ 22802172 (+)
XLOC_037115 tsn coding downstream 256849 22929675 ~ 22939510 (+)
XLOC_037116 NA coding downstream 316115 22988941 ~ 22998060 (+)
XLOC_037104 NA non-coding upstream 343359 22312733 ~ 22313617 (+)
XLOC_037095 CR536604.1 non-coding upstream 670980 21984109 ~ 21985996 (+)
XLOC_037089 NA non-coding upstream 891241 21761696 ~ 21765735 (+)
XLOC_037119 CR394542.1 non-coding downstream 373441 23046267 ~ 23046385 (+)
XLOC_037122 NA non-coding downstream 453330 23126156 ~ 23128231 (+)
XLOC_037126 NA non-coding downstream 649008 23321834 ~ 23333979 (+)
XLOC_037127 NA non-coding downstream 691022 23363848 ~ 23456345 (+)

Expression


Co-expression Network