G1782532


Basic Information

Item Value
gene id G1782532
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17232881 ~ 17235607 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2040896
ggcaaaagggggtgcaaaacaatattaggaagctgttcttaatgttttgtacactcagtgtacatggaTGTTATAACCATAAGCTGATTGGGCTACGTGTCAGTGCAAAGTTCAGATAAATATTGCTGGCCTATTTTTGCAATCCTTTAGTGTCTCATCTCCATTTTGAAGCTAGTCATTTCTTAATAATCCATGTTGAATAAGAGGATGTGGACCCATATCAGCCAGGCCTGAACTGAATTTATTCCGGATTTAAAAATGTCAGGTACAATGAAGTCAGAGATGCATTTCAATTTCTATTTATAGTTCCGCTACGCCAGTGCCTAACTCCTGAGCCATGAGCCATTTGATTAAATTACAGTCAGAAGAGAGCATCTTTCTCTAAATCcttattacatttttaaaaaggcataGGACTTAATGTCATCgggtatactgaacaaaatgagaaacgcaacatgcaacaatttcaaagattttactgagttacaattcctGTAactaaatcagtcaattgaaataaattcattaggcccaaatctatggatttcccgtgactgggaatacagatatgcatctgttggtcacagataccttagaaaaaaaggtaggggtgttaatcagaaaaccagtcagtatctcgTGTGACCACCATTTCTCTCATGTAGCGCGACACATTTCCTTCGCATAGTTGATCAGGCTTCTGATtgcggcctgtggaatgttgtcccactcctcttcaatggctgtgcaaagatGCTGGaaattggcgggaactggaacacgctgtcgtacacgtcaatcctgagcattccaaacatgctcaacgggtgacatatctggtgaggacgtgggccatggaagaactgggacattttcagacccaggaattgtgtacagatccttgcaacatggggctgtgcattatcatgctgaaacatgaggtgatggcagcagataaatggcacgacaatggacctcaggatctcatcatggtatctctgtccattcaaattgccatcgataaaatgcaattgtgttcattgtccgtagtttatgcctgccgaTAACATatccccaccatggggcactctgttcacaacgctgacatcagcaaaccattcacccacacaatgccatacatgtGGCCTGCGGTTGAGGCCGGTTGAACATACTGACATTGGAGGCGGTATATGGTAGATAAAACATTTAATTGTGGCAATAGCTCTGgctgacattcctgcagtcagcatgccaattgcacgctccctcaaaacgtgcgatatctgtggcattgtgttgtgtgacaaaactgcacattttagtgggcttttattgtccccagcacaaggtgcacctatgctGTTCAttcagcttcttgaaatgccgCATCAGTTggctggatggattatcttggcaaaggagaaatgctcactaacagggatgtaatcaaatttgtgacaaaaaaaattagagaaataagctttttgtgcatatagatcatttctgggatctttacaGGTTGCGTTTATCTTTCTGTTCCGTGTAGTTACAGAGAAACCAACAATTTCATCTACACAGTCAAGGTAGTCAAAAGCAacacaatatatacagttgaagtcggaagtttacatacacttaggttggagttattaaaactcgtttttcaaccactccacacatttcttgttaacaaactatagctttggcaagtcggttaagacatctactttgtgcatgacacaggtaattttttcaacaattgtttacatacagattatttaatttataattcactgtatcacaattccagtgggtcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaactccagaaaattatgtcatggctttagaagcttctgataggctaatgacatcctttgagtcaattggaggtgtacctgtggatgtatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaaatcagccaagacctcagaaaataaattgtagacctccacaagtctggttcatccttgggagcaatttccaaatgcctgaaggtactatgttcatctgaacaaacaatagtacacaagtataaactcagcaaggaagaaacaaggaagaagccactgctccaaaatcggtgtatgtaaacttccgacttcaactgcaataCCATTACAAATATACCACACAATTGCGTATGAGCCCACTCTTTGAGCTTCATTTAACAAATCATACACGATACAACACATCTGTCAAATCTTCATGTACTTTTAGAACACTTTAAATAATATCTTAACATATCAACATGACTgtatacatacactgagtgtacaaaacattaagaacacctgctctttccatgacagtctgatcaggtgaaagctatgatcccttattgatgtcacctgttaaatccacttcagtcagggGCAAAAGGGGTGAAACTCAATAGGAaggagttcctaatgttttctacactccgTGTATGTCCACGTAACAGTCGAGGCTGTAGCTATGTGCAGTTCATGGGCAGCAGATGTGATCGGAGGGAGCTTTAGACGACGAGGCCCAGGCGTTTCTTGATGAAGTGGGCCACCAGAACCTGAGGTCTCTGTTGGTACTCCACTAGCACATCATGAGGGGTGGAGATCTGATCCCCATCGAAACGGTTCAACAAAGT

Function

NR:

description
Transposable element Tcb2 transposase

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2040896 True 2727 lncRNA 0.41 1 17232881 17235607

Neighbor

gene id symbol gene type direction distance location
LOC110501515 ccdc148 coding upstream 6825 17178459 ~ 17226056 (+)
LOC110502058 NA coding upstream 368495 16846918 ~ 16864386 (+)
LOC110501510 NA coding upstream 378177 16853656 ~ 16854704 (+)
LOC110501507 baz2b coding upstream 388681 16754322 ~ 16844200 (+)
LOC110501506 cd302 coding upstream 487549 16739540 ~ 16745332 (+)
LOC110501518 acvr1 coding downstream 20273 17255880 ~ 17290932 (+)
LOC110501520 acvr1c coding downstream 66993 17302600 ~ 17331284 (+)
LOC110501521 cytip coding downstream 100850 17336457 ~ 17340925 (+)
LOC110501522 ermn coding downstream 106779 17342386 ~ 17344374 (+)
LOC110501524 LOC106586168 coding downstream 253713 17489320 ~ 17495933 (+)
G1782529 NA non-coding upstream 2127 17230371 ~ 17230754 (+)
G1782491 NA non-coding upstream 61710 17170953 ~ 17171171 (+)
G1782487 NA non-coding upstream 67618 17165030 ~ 17165263 (+)
G1782483 NA non-coding upstream 75934 17156328 ~ 17156947 (+)
G1782481 NA non-coding upstream 78443 17153300 ~ 17154438 (+)
G1782530 NA non-coding downstream 5593 17241200 ~ 17242745 (+)
G1783090 NA non-coding downstream 82979 17318586 ~ 17324714 (+)
G1783120 NA non-coding downstream 122413 17358020 ~ 17358256 (+)
G1783186 NA non-coding downstream 143148 17378755 ~ 17379020 (+)
G1783188 NA non-coding downstream 143988 17379595 ~ 17379804 (+)
G1782390 NA other upstream 191208 17006034 ~ 17041673 (+)
G1781813 NA other upstream 959771 16272389 ~ 16273110 (+)
G1781423 LOC106581799 other upstream 1169480 16062757 ~ 16063401 (+)
G1781293 LOC106586198 other upstream 1384286 15839604 ~ 15848595 (+)
G1780575 NA other upstream 1799061 15424711 ~ 15433820 (+)
G1783087 NA other downstream 60346 17295953 ~ 17296359 (+)
G1783622 NA other downstream 506150 17741757 ~ 17742435 (+)
G1783691 LOC106586162 other downstream 674293 17909900 ~ 17911226 (+)
kalrna LOC106581831 other downstream 866324 18101519 ~ 18386130 (+)
G1784476 asic4 other downstream 1530712 18766319 ~ 18767140 (+)

Expression


Co-expression Network