XLOC_037117 (eaf2)


Basic Information

Item Value
gene id XLOC_037117
gene name eaf2
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23003208 ~ 23007941 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073068
GTGAGCAACGGGTCCAGAAGTGAGGCGTCTATTTCTGCCTTAGATGGTATCAAACCAAGCAGAAAGTTGAAAATCGCTAATATATGGTTGAAAATTTGGATTAGAATGAATGGAACAGCATATTCAAACTTTGACAGTCAAGAACACGTCCTCAAACTAGGCGAAACTTTTGAGAAACAACCTAAAAGTGCATTCCACACGGTACGATATGATTTCAAACCAGCCTCCATAGACACTACATGTGAGGGGGAGCTGGAAGTGGGAAAAGGAGAGCAAGTTACAATCACATTACCGAACTTGGAAGGATCCACAGCACCAGTTACTGTATTTAAAGGCTCTAAAAGGCCTTATATGAAGGAGTGTATTCTGATTGTTAACCATGACACAGGAGAGTATCGTCTGGAGAAACTCAGCAACAACATTGCGGTCAAGAAGACCAGGGCTGAGGGAAGCAGTAAGATTCAGTCACGGCTGGAGCAACAAACCAGCAGACTCAGCCAGCAGATGAAGACGGGTAGCGGAAGCAAGGCTCCATCCAGCACCAAGAGCTCTCCTCCCAAAGAAAAGATGTCTCCATCATCTCCTATGGATGATATTGAGCGAGAGCTCATGGCCGAGGCGCGTGTCATGGATCAGATGAGCAGCGGCGACAGCTCATCAGATTCCCACAGTTCCTCCTCATCCAGCAGCGGCGACAGCTCCAGCAGCAGTGACTCCGAGGATGAGGGTCGTCCTCCACAAAATCCACCCCCAGCTCCTCCTCAGAGCTCATCTGCCCTCAGCATATCTCAAAGCCGCGTGGAGGAGAGTGGCGGCGATTTCATGAACACACTCAAAAATGATCTCCAGTTGAGTGAGTCTGGAAGTGAAAGCGATGATGACTGACCGCAAACATACCTAATGCTGAAATAGGGTTTACAGGAAGCACAGTGTCCGTTCACTAGCTAAAAACTTCACATGATACCTGAATCCAGATCCCTAGTAACTTTTCAGTTATGAAACATTTTCTTTCCCCCAGTTTCTTAGTAGTACTTGCATCGGCACAAGTCATTAGACATAAAGCTGGGGGGTGAGTTTGCTGTATTAGTAAATTAAGAAGACGTATTTATTTTGTTGAGAATGCTACTTAGGTTATAGTTTTATAGGAAAGTCCTATAGTTGCTTTCTCAGAGGTTATAGAAATGTATCTGTTTTTGAGATAACTTGAGTTTAGTAAGACCACCGTGGTCATCTTCAATATATGAACAGTTCAGATGTAAAAACCTCTTGAGTGCCATCTGAACTTTCCACAAAAAATGAGCATTGTTCTCAgtctcctttgtttatgttgagttatttcagtTTATAGACCATGAAAAAacttatttgccataaaagtgaaattactgaacctaaacACAGGATCCTGATGAAAATACTTATTTTAGAAGTAAATTTCAGACGGCTTACATACATATATTTCAGGTTCAACATACTCAAGCACAAGTGTGTGCAGAATAATAAAAGTAGTCTTAATGAGCACCAATACAAGAAGGTGtcaaacttaattttattttcacattacCCAACCTGCAATACTTGAATCTGTCTCTCTTATGATTCAGAGACATTTGTTCATAACAAACTGTGCCTTGTAAATAAGGTGTTTTACTATCCATCCCATCCCATTCTCTTGGTTTGAAGTTACCTTTTTTTTAATTCCTGCATTGTTAGAATTTAATCTATATTTAGAGGTAAAAGCCTACATGTTGTGTATGTCTTACTGTCTGCCTCTGGAAGGCCAAAACGCAACAATCTCACTCTTAAATTATGTCTTCATCCAGCCCTTCTTGAGCACTAATGGCAAATTATGAAGTGCCATTGTGTGCATTATAGCAGGGTTGACTGATAGTTCTGTCAGAGGTGTTTGATCATTCAAATTGTGTGTAGATCAATAAAGATTTGTTTTGCGACAT
>TCONS_00073069
CTTCCTGGACACAGATGATTTCAAACCAGCCTCCATAGACACTACATGTGAGGGGGAGCTGGAAGTGGGAAAAGGAGAGCAAGTTACAATCACATTACCGAACTTGGAAGGATCCACAGCACCAGTTACTGTATTTAAAGGCTCTAAAAGGCCTTATATGAAGGAGTGTATTCTGATTGTTAACCATGACACAGGAGAGTATCGTCTGGAGAAACTCAGCAACAACATTGCGGTCAAGAAGACCAGGTAAAAACACTTTTGAGTTTCAAGTCATATAAATATGATGCTTCCTTCTAATCCTTTGAATTGTATGTGAAGTAAATAAATTGTCAAATTCTCTTTTCTGTCCAGGGCTGAGGGAAGCAGTAAGATTCAGTCACGGCTGGAGCAACAAACCAGCAGACTCAGCCAGCAGATGAAGACGGGTAGCGGAAGCAAGGCTCCATCCAGCACCAAGAGCTCTCCTCCCAAAGAAAAGATGTCTCCATCATCT
>TCONS_00075105
CTTCCTGGACACAGATGATTTCAAACCAGCCTCCATAGACACTACATGTGAGGGGGAGCTGGAAGTGGGAAAAGGAGAGCAAGTTACAATCACATTACCGAACTTGGAAGGATCCACAGCACCAGTTACTGTATTTAAAGGCTCTAAAAGGCCTTATATGAAGGAGTGTATTCTGATTGTTAACCATGACACAGGAGAGTATCGTCTGGAGAAACTCAGCAACAACATTGCGGTCAAGAAGACCAGGGCTGAGGGAAGCAGTAAGATTCAGTCACGGCTGGAGCAACAAACCAGCAGACTCAGCCAGCAGATGAAGACGGGTAGCGGAAGCAAGGCTCCATCCAGCACCAAGAGCTCTCCTCCCAAAGAAAAGATGTCTCCATCATCTCCTATGGATGATATTGAGCGAGAGCTCATGGCCGAGGCGCGTGTCATGGATCAGATGAGCAGCGGCGACAGCTCATCAGATTCCCACAGTTCCTCCTCATCCAGCAGCGGCGACAGCTCCAGCAGCAGTGACTCCGAGGATGAGGGTCGTCCTCCACAAAATCCACCCCCAGCTCCTCCTCAGAGCTCATCTGCCCTCAGCATATCTCAAAGCCGCGTGGAGGAGAGTGGCGGCGATTTCATGAACACACTCAAAAATGATCTCCAGTTGAGTGAGTCTGGAAGTGAAAGCGATGATGACTGACCGCAAACATACCTAATGCTGAAATAGGGTTTACAGGAAGCACAGTGTCCGTTCACTAGCTAAAAACTTCACATGATACCTGAATCCAGATCCCTAGTAACTTTTCA
>TCONS_00073070
GGAAGTGGGAAAAGGAGAGCAAGTTACAATCACATTACCGAACTTGGAAGTAGGTTTCATAACCTTACATTCTGAAGTGTACGTAAAATGAATGATTCTTGAGTCTTTTTCTCTCCAATCAACCCTTTCAGGGATCCACAGCACCAGTTACTGTATTTAAAGGCTCTAAAAGGCCTTATATGAAGGAGTGTATTCTGATTGTTAACCATGACACAGGAGAGTATCGTCTGGAGAAACTCAGCAACAACATTGCGGTCAAGAAGACCAGGGCTGAGGGAAGCAGTAAGATTCAGTCACGGCTGGAGCAACAAACCAGCAGACTCAGCCAGCAGATGAAGACGGGTAGCGGAAGCAAGGCTCCATCCAGCACCAAGAGCTCTCCTCCCAAAGAAAAGATGTCTCCATCATCTCCTATGGATGATATTGAGCGAGAGCTCATGGCCGAGGCGCGTGTCATGGATCAGATGAGCAGCGGCGACAGCTCATCAGATTCCCACAGTTCCTCCTCATCCAGCAGCGGCGACAGCTCCAGCAGCAGTGACTCCGAGGATGAGGGTCGTCCTCCACAAAATCCACCCCCAGCTCCTCCTCAGAGC
>TCONS_00073071
GGTGTAAATGAGTTGTTCAGGGAAAACTCCTTGTTATGATGTGTTTGTGCAGAGCTCATGGCCGAGGCGCGTGTCATGGATCAGATGAGCAGCGGCGACAGCTCATCAGATTCCCACAGTTCCTCCTCATCCAGCAGCGGCGACAGCTCCAGCAGCAGTGACTCCGAGGATGAGGGTCGTCCTCCACAAAATCCACCCCCAGCTCCTCCTCAGAGCTCATCTGCCCTCAGCATATCTCAAAGCCGCGTGGAGGAGAGTGGCGGCGATTTCATGAACACACTCAAAAATGATCTCCAGTTGAGTGAGTCTGGAAGTGAAAGCGATGATGACTGACCGCAAACATACCTAATGCTGAAATAGGGTTTACAGGAAGCACAGTGTCCGTTCACTAGCTAAAAACTTCACATGATACCTGAATCCAGATCCCTAGTAACTTTTCA

Function

symbol description
eaf2 Enables armadillo repeat domain binding activity and beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and muscle cell migration. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including blastoderm; blastodisc; nervous system; pleuroperitoneal region; and presumptive neural retina. Orthologous to human EAF2 (ELL associated factor 2).

GO:

id name namespace
GO:0042074 cell migration involved in gastrulation biological_process
GO:0030111 regulation of Wnt signaling pathway biological_process
GO:0014812 muscle cell migration biological_process
GO:0007507 heart development biological_process
GO:0006355 regulation of transcription, DNA-templated biological_process
GO:0031016 pancreas development biological_process
GO:0060028 convergent extension involved in axis elongation biological_process
GO:0060029 convergent extension involved in organogenesis biological_process
GO:0032783 super elongation complex cellular_component
GO:0005515 protein binding molecular_function
GO:0070016 armadillo repeat domain binding molecular_function
GO:0008013 beta-catenin binding molecular_function

KEGG:

id description
ko03036 Chromosome and associated proteins

ZFIN:

id description
ZDB-GENE-040625-179 Enables armadillo repeat domain binding activity and beta-catenin binding activity. Acts upstream of or within several processes, including cell migration involved in gastrulation; convergent extension; and muscle cell migration. Predicted to be located in nucleus. Predicted to be part of transcription elongation factor complex. Is expressed in several structures, including blastoderm; blastodisc; nervous system; pleuroperitoneal region; and presumptive neural retina. Orthologous to human EAF2 (ELL associated factor 2).

Ensembl:

ensembl_id ENSDARG00000010432

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073068 False 1955 mRNA 0.41 6 23003208 23007941
TCONS_00073069 False 493 lncRNA 0.44 2 23003876 23004450
TCONS_00075105 False 798 lncRNA 0.50 5 23003876 23006978
TCONS_00073070 False 596 lncRNA 0.49 3 23003936 23006666
TCONS_00073071 True 440 processed_transcript 0.50 2 23006451 23006978

Neighbor

gene id symbol gene type direction distance location
XLOC_037116 NA coding upstream 5148 22988941 ~ 22998060 (+)
XLOC_037115 tsn coding upstream 63698 22929675 ~ 22939510 (+)
XLOC_037114 rif1 coding upstream 201036 22780901 ~ 22802172 (+)
XLOC_037113 tnfaip6 coding upstream 223395 22764235 ~ 22779813 (+)
XLOC_037112 itgb5 coding upstream 255193 22677503 ~ 22748015 (+)
XLOC_037118 si:dkey-91i10.3 coding downstream 1667 23009608 ~ 23023288 (+)
XLOC_037119 CR394542.1 coding downstream 38326 23046267 ~ 23046385 (+)
XLOC_037120 mmadhc coding downstream 41559 23049500 ~ 23056240 (+)
XLOC_037121 BX936418.1 coding downstream 116311 23124252 ~ 23162384 (+)
XLOC_037122 NA coding downstream 118215 23126156 ~ 23128231 (+)
XLOC_037110 NA non-coding upstream 360523 22642386 ~ 22642685 (+)
XLOC_037108 BX548053.3 non-coding upstream 426149 22576945 ~ 22577059 (+)
XLOC_037104 NA non-coding upstream 689591 22312733 ~ 22313617 (+)
XLOC_037095 CR536604.1 non-coding upstream 1017212 21984109 ~ 21985996 (+)
XLOC_037126 NA non-coding downstream 313893 23321834 ~ 23333979 (+)
XLOC_037127 NA non-coding downstream 355907 23363848 ~ 23456345 (+)
XLOC_037128 CR392363.1 non-coding downstream 356301 23364242 ~ 23367209 (+)

Expression


Co-expression Network