G1783895 (LOC106581829)


Basic Information

Item Value
gene id G1783895
gene name LOC106581829
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 17869529 ~ 17903951 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2042341
TTCCTCCAACCAAGATTCATTTTAAAATGTCTCGTTTCACCTGTACAGAACATGGATTCTTCAAACAGACTTTGGGACAAACGGTGAATAACTacttctctatatagtgcactacttttgaccatggttcctggtcaaaagtagtgcattataatgggaatagggtggcatttgggactcaGACTAAGAAAATGAGCTGCAGGGCAAAGTCACCGTGAAGAGCAATGTTAAGATGTGCTTTTAATCCACTTAGATGTCAAACTAGTAGCAAAGAAAAACTTCTACCAATGACTACAAATTACAAAGAGAAAGGATATTATCAAACATTTCAACACAGTAGACCGTACTCTGATAAAGTAGTCaactctgcctgtgaccacttccCATTATGTAAGGAAACAAAGAAAATATGTACCCAGCTTTCTTGTGCGGCGGATTCATTCCCATTatagtttacatacagtcaaagTAGGGTTGCGAAATTCTGGTAAACTCCCCCAAATGGGAATTCCTGAAAACCTGGGATTTTGGGGAAATTTACCAGAATTTTGCAGCACCTGTCCAAGCATGTGTGGCCTTACGCTGAAAAGGAAGCACTAGGGGGAATGCATGTTGGATGAAGTGAAGAAAGAGAGCATTAAGGAGCATCCAGCTGTTCTAGTagagtcctcctcctcttctccagctCTCCTTCACTCAGCTCGCTGCCTGATGTGTCCCAGCCACCCTCCTCCTTGGTAGATTTCCTTTTAGGAGACTTCTGCTTGGAGTCAGAGCGACTCTTCCCCCGGGActtgtcgctctctttctccttctcctggtCCTTCTCACGCTTGcagtccctctctcttcctttatcTTTTCGTTCGCCTTCAGATTCAGGAGACGACTTGTGACGCCTCTTCTTTCCCTTCTTCTTGTGCTTCTTGGACTTCTTATAACTTCTCTCAGATTCACCGCTGGAGGAGCGCTCGGACGGGGACTTGGACTGTGAGCGCTTCTTCTTCTTGTTGTGATAATCGTCTTCACCATCAGACTCCGAGCCCGATCGCGATCGAGACCGGGAACGGGAGCGCTTCCTGTGGTGCTTCTTGGACTTCTTAGAATGTTTCTTGGTCTTGGAGTGATGATGCTGGCACTCGTGCTCCAAGACATGCATGAAGTCTTTGAATATCCTTTTCCTCTCAGACTCCAGAGTCACGTCTTCGAACGCAGATTCTTTGAGGAACCTTTCTCGGACCCCCTCCCAAGTGGCCTCTGGTTCCAGGGCCGGGGTGGCCTGCTTCAACATGCTCTTAAAGGTGGCCTCTTTCCTCTTCATCTTCCTGGCCTCCTccttctcccgctccctctcccgaGCCTCTGCCTTCTCCAGCAAACTGTTGAAGGCCAGCTTGATGTTGCCTGCGTCCAGCGTCATGGCTCTCTTGTCTGAGCTGATCACAGAGCCAAAGTCTTCAAAGCTAGTGTTGACCTCCACCAGGAAGTTTTTGTCCTTCAGGATATCCTTAATGATCCTCTTCTCGTCGTGGTAGCGAGCCTTCAGGTCTTCCACATAGAACTTGAACAGATCGAGGGGAGTGGAGCCTGCAGAATAGACACCATAAACTGGCTGTCCCAGCATGTTGGCGAAGCGGATGTCTGAGCTGACGGTGGGGTACATCTCCATCCAGGCAGACATGGAGTGGAGTTGACCGTGGTCATGGAGCTCGTCCAGGAATTTCTGGAAGGACTCTCTGTTCTTGcgctgtctcctcctctccctcagcaAAGTCTTCTGcttctcgtcctcctcctccttctccagcgCACGGATGTGCTCCTCGAAACAAATCAGAGCATCCTCCTTGTCCATGTTCTGGAGCTCCTCGTCCTCTGCGAAGGTGGGGTTGTCCAGCAGGTACTGCTGGGCCTCGGACCAGGTGGTGCGGTAGGTCACGTTGGCCATGTTGTCCAGGATGTTCTTCAGCGCCTCCCAGTTCCTCTTCCTCAGCTGCTTGGCTTGCtcCTTCTCCTTCTTGGCCAGGTAGAATAGGACATCTTCATAGATCTCCAGTCGGTCTCTCTCTGGGACGGTGCTCCACACGTCCAGCTCTGCAAACATCTGCTCTGCTTTcTTGTATCTGGTGGTAGATGTCATTTTCTCGTGATTCTCCAAAAATCTCTGATACGTTTCCTTGGACTCCTTGTATTTGAGTCtggcctcctccttctcctctttctctgtctgcacCTTGTAAGCATTGAAGGCCTGCTTTTTCTCACTTAATTTGGGCAGGGCACTGTAGCGTGGGTCATTGATGATCATTTTCATGGCTTGTTCCCAAGACGCATTGGATGAAACGCCCTTCTCCTTCAGGAGCTCTTTAAAGGCCTGCTTGGCCTCTTCTTTCGTGTTCCACTTGTACGTTTTCTTCACCAGCTCTGGCCTCTCATCCTTTGAAGCGTCATTaCTGGCTGGGGCCTCCATGCTGACCGCTTCTTCTGTGGAGTTCACAGGCGCCTCAGCGCTGACCTCCGCTACATGCATGGGCACCTGGGACATCTGTTCCTCCAAAACTGTTGTAATCGGCATCATGACCGGCATTTCCATCATCATGGTTGCCATGACAGCAGCACTGTCAGGCTGAAGGGTGGGGGCGATTACAGCGCAAGGAGCGCCTACCTCCGATGTCCCATTCTCCTCGGCTTTTATCATGGCTTCCAGATCTTCAAGCTCTTTAGGTTTGGTCCACCGGGACTCCTTAGTCTGGGAGTTGTAGTAGTACGCCTTGCCATTGTCTGATTTATACTCCTTCCATGGGCATTTTGACAGCATTTGTTCTGCAGGAGATTTCAAGTCATCAGGCTTCTCCCAGGAAGACTGCTTGGTCTcggtgttgtagtagtaggtctTCCCATCCATGGACTTGTGTTCTGTCCACACAGACTTCTTCTTCGGTTGGTCATCCTGTGGCGTGCCATTTGTGGTACCAACTGTTCCAGGCGCAGCAGTGACAGTTGTGTCCACTCCAGGCGGTCCTGTTGGCTGCATCGCCGCAGCAGACATGTGAGGGGGCATCATCATCCCGGGCATCATAGGTGGCATCATGCCTGGTATCTGTCCCATCGGTGGCATCATGCCAGGTGGCATCATGCCAGGCGGCATGGGAGCCATGTTGGGAGGCCTCTGTCCCATGGGTGGAATTCCCATTGGTGGGTAATGAGGCGGCATTCCCGGTGGTCCCATCATGTTGACTTCACGGTGAGCGTCCAGACCTGGCCACTCCACAATAACGTGCAATCTGATTGGTTAGTTTGCCTTGAATGAAAGGGCAAAGGTGAACCAAATGTTCTCAATACAATCTACGCACAGATTGTAACTTGTAATTCTGTCGGGTAGACAACTGATTTTTCGGGAACTCATGGATTCTTTAGACTGAAATATCCCATATTTTTTCGACTGAATGTTTTCTTCATAATAATCACatctgaaatatatattttttataaactaaAGTATCAGCTATCACATCATGTA
>TU2042338
TTCCTCCAACCAAGATTCATTTTAAAATGTCTCGTTTCACCTGTACAGAACATGGATTCTTCAAACAGACTTTGGGACAAACGGTGAATAACTacttctctatatagtgcactacttttgaccatggttcctggtcaaaagtagtgcattataatgggaatagggtggcatttgggactcaGACTAAGAAAATGAGCTGCAGGGCAAAGTCACCGTGAAGAGCAATGTTAAGATGTGCTTTTAATCCACTTAGATGTCAAACTAGTAGCAAAGAAAAACTTCTACCAATGACTACAAATTACAAAGAGAAAGGATATTATCAAACATTTCAACACAGTAGACCGTACTCTGATAAAGTAGTCaactctgcctgtgaccacttccCATTATGTAAGGAAACAAAGAAAATATGTACCCAGCTTTCTTGTGCGGCGGATTCATTCCCATTatagtttacatacagtcaaagTAGGGTTGCGAAATTCTGGTAAACTCCCCCAAATGGGAATTCCTGAAAACCTGGGATTTTGGGGAAATTTACCAGAATTTTGCAGCACCTGTCCAAGCATGTGTGGCCTTACGCTGAAAAGGAAGCACTAGGGGGAATGCATGTTGGATGAAGTGAAGAAAGAGAGCATTAAGGAGCATCCAGCTGTTCTAGTagagtcctcctcctcttctccagctCTCCTTCACTCAGCTCGCTGCCTGATGTGTCCCAGCCACCCTCCTCCTTGGTAGATTTCCTTTTAGGAGACTTCTGCTTGGAGTCAGAGCGACTCTTCCCCCGGGActtgtcgctctctttctccttctcctggtCCTTCTCACGCTTGcagtccctctctcttcctttatcTTTTCGTTCGCCTTCAGATTCAGGAGACTGCGACTTGTGACGCCTCTTCTTTCCCTTCTTCTTGTGCTTCTTGGACTTCTTATAACTTCTCTCAGATTCACCGCTGGAGGAGCGCTCGGACGGGGACTTGGACTGTGAGCGCTTCTTCTTCTTGTTGTGATAATCGTCTTCACCATCAGACTCCGAGCCCGATCGCGATCGAGACCGGGAACGGGAGCGCTTCCTGTGGTGCTTCTTGGACTTCTTAGAATGTTTCTTGGTCTTGGAGTGATGATGCTGGCACTCGTGCTCCAAGACATGCATGAAGTCTTTGAATATCCTTTTCCTCTCAGACTCCAGAGTCACGTCTTCGAACGCAGATTCTTTGAGGAACCTTTCTCGGACCCCCTCCCAAGTGGCCTCTGGTTCCAGGGCCGGGGTGGCCTGCTTCAACATGCTCTTAAAGGTGGCCTCTTTCCTCTTCATCTTCCTGGCCTCCTccttctcccgctccctctcccgaGCCTCTGCCTTCTCCAGCAAACTGTTGAAGGCCAGCTTGATGTTGCCTGCGTCCAGCGTCATGGCTCTCTTGTCTGAGCTGATCACAGAGCCAAAGTCTTCAAAGCTAGTGTTGACCTCCACCAGGAAGTTTTTGTCCTTCAGGATATCCTTAATGATCCTCTTCTCGTCGTGGTAGCGAGCCTTCAGGTCTTCCACATAGAACTTGAACAGATCGAGGGGAGTGGAGCCTGCAGAATAGACACCATAAACTGGCTGTCCCAGCATGTTGGCGAAGCGGATGTCTGAGCTGACGGTGGGGTACATCTCCATCCAGGCAGACATGGAGTGGAGTTGACCGTGGTCATGGAGCTCGTCCAGGAATTTCTGGAAGGACTCTCTGTTCTTGcgctgtctcctcctctccctcagcaAAGTCTTCTGcttctcgtcctcctcctccttctccagcgCACGGATGTGCTCCTCGAAACAAATCAGAGCATCCTCCTTGTCCATGTTCTGGAGCTCCTCGTCCTCTGCGAAGGTGGGGTTGTCCAGCAGGTACTGCTGGGCCTCGGACCAGGTGGTGCGGTAGGTCACGTTGGCCATGTTGTCCAGGATGTTCTTCAGCGCCTCCCAGTTCCTCTTCCTCAGCTGCTTGGCTTGCtcCTTCTCCTTCTTGGCCAGGTAGAATAGGACATCTTCATAGATCTCCAGTCGGTCTCTCTCTGGGACGGTGCTCCACACGTCCAGCTCTGCAAACATCTGCTCTGCTTTcTTGTATCTGGTGGTAGATGTCATTTTCTCGTGATTCTCCAAAAATCTCTGATACGTTTCCTTGGACTCCTTGTATTTGAGTCtggcctcctccttctcctctttctctgtctgcacCTTGTAAGCATTGAAGGCCTGCTTTTTCTCACTTAATTTGGGCAGGGCACTGTAGCGTGGGTCATTGATGATCATTTTCATGGCTTGTTCCCAAGACGCATTGGATGAAACGCCCTTCTCCTTCAGGAGCTCTTTAAAGGCCTGCTTGGCCTCTTCTTTCGTGTTCCACTTGTACGTTTTCTTCACCAGCTCTGGCCTCTCATCCTTTGAAGCGTCATTaCTGGCTGGGGCCTCCATGCTGACCGCTTCTTCTGTGGAGTTCACAGGCGCCTCAGCGCTGACCTCCGCTACATGCATGGGCACCTGGGACATCTGTTCCTCCAAAACTGTTGTAATCGGCATCATGACCGGCATTTCCATCATCATGGTTGCCATGACAGCAGCACTGTCAGGCTGAAGGGTGGGGGCGATTACAGCGCAAGGAGCGCCTACCTCCGATGTCCCATTCTCCTCGGCTTTTATCATGGCTTCCAGATCTTCAAGCTCTTTAGGTTTGGTCCACCGGGACTCCTTAGTCTGGGAGTTGTAGTAGTACGCCTTGCCATTGTCTGATTTATACTCCTTCCATGGGCATTTTGACAGCATTTGTTCTGCAGGAGATTTCAAGTCATCAGGCTTCTCCCAGGAAGACTGCTTGGTCTcggtgttgtagtagtaggtctTCCCATCCATGGACTTGTGTTCTGTCCACACAGACTTCTTCTTCGGTTGGTCATCCTGTGGCGTGCCATTTGTGGTACCAACTGTTCCAGGCGCAGCAGTGACAGTTGTGTCCACTCCAGGCGGTCCTGTTGGCTGCATCGCCGCAGCAGACATGTGAGGGGGCATCATCATCCCGGGCATCATAGGTGGCATCATGCCTGGTATCTGTCCCATCGGTGGCATCATGCCAGGTGGCATCATGCCAGGCGGCATGGGAGCCATGTTGGGAGGCCTCTGTCCCATGGGTGGAATTCCCATTGGTGGGTAATGAGGCGGCATTCCCGGTGGTCCCATCTAGACAGGTGAAAATATAGGAGACACATGCTGTGAGATTCAACACACTCAATGAGACCCCATTTTGAGATGCCATTGGGAACACATAGAAGATACAGGTGTTTTCCAACACCAACTTACAAAAGGCGGTGGCATGCCTGAGGTTGGGACCCCAGCAAAAGGAGGTGCTTGGCTCTGGCCATTATTACCATCTGAAGACTGGACATGAATGAACAAGAGACCCCATTTATACAGTTACAGCTTGTATGTTAATATGGCTCACATATGTACTGTACTAGGCCTAGTCCAAACGGAAAACGTTTTGCAACTTAAACGAGTATGTAttagacaaattcaggtatgtccATCCCTGTTCCCTGTCTTGCTTCCGTTTGGTTCCTAGAGTAAACGGTTAAGCGGTTTTCGTTGCAAAGCAAAACATGCTTAACTTCCCGTGGGCTGTTCAGTTTTTTTGCAACCAAATTTTGCTAATAACAGGCAGGCTAGCTAGATAATACAGTTACCGCCATGCTAGCAAAcatagctacctagctagcatgAACTATTCAATACAttgactagctaacgttagctgctaTTCTCGCGGAGTGTCAACGCAAACATATTGCTAGCTAGTTGGATAACGTGATGTGTTCACACAGGTAACTCCTCC

Function

NR:

description
pre-mRNA-processing factor 40 homolog A-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2042341 False 3520 TUCP 0.49 26 17869529 17903951
TU2042338 True 3884 TUCP 0.49 25 17870128 17903951

Neighbor

gene id symbol gene type direction distance location
LOC110501526 LOC106581824 coding downstream 54185 17748517 ~ 17815344 (-)
LOC110501525 kcnj3 coding downstream 161285 17678888 ~ 17708244 (-)
LOC110502059 gpd2 coding downstream 383313 17444484 ~ 17486216 (-)
LOC110501523 galnt5 coding downstream 511918 17348212 ~ 17357611 (-)
LOC110501517 LOC106581816 coding downstream 616002 17241708 ~ 17253527 (-)
fmnl2a LOC106581828 coding upstream 2107 17906058 ~ 17995814 (-)
LOC110501531 LOC106581830 coding upstream 105972 18009923 ~ 18087956 (-)
LOC110502115 LOC106581727 coding upstream 194854 18098805 ~ 18100719 (-)
LOC110502060 LOC106586154 coding upstream 523191 18427142 ~ 18428030 (-)
wnt10a LOC106581835 coding upstream 604052 18508003 ~ 18526067 (-)
G1783903 LOC106581827 non-coding downstream 47958 17818656 ~ 17821571 (-)
G1783513 NA non-coding downstream 257128 17611203 ~ 17612401 (-)
G1783410 NA non-coding downstream 315709 17553552 ~ 17553820 (-)
G1783391 NA non-coding downstream 328646 17540554 ~ 17540883 (-)
G1783354 NA non-coding downstream 355446 17513881 ~ 17514083 (-)
G1784633 NA non-coding upstream 149443 18053394 ~ 18053684 (-)
G1784734 NA non-coding upstream 314041 18217992 ~ 18228343 (-)
G1784742 NA non-coding upstream 327641 18231592 ~ 18231848 (-)
G1784829 NA non-coding upstream 454613 18358564 ~ 18359224 (-)
LOC110501514 dapl1 other downstream 806081 17057104 ~ 17063550 (-)
b3galt1b LOC106581793 other downstream 2044315 15684423 ~ 15825221 (-)
G1781137 lrp2 other downstream 2300995 15567503 ~ 15568534 (-)
G1778224 NA other downstream 4539034 13279280 ~ 13330495 (-)
G1778140 efnb2 other downstream 4696550 13168780 ~ 13172979 (-)
LOC110501547 LOC106586143 other upstream 1271616 19175567 ~ 19179266 (-)
G1785753 NA other upstream 1417237 19321188 ~ 19321859 (-)
znf142 znf142 other upstream 1752331 19655763 ~ 19666201 (-)
G1786832 LOC100136012 other upstream 2441748 20345699 ~ 20346014 (-)
G1787166 NA other upstream 2486565 20390516 ~ 20455983 (-)

Expression


Co-expression Network