XLOC_037118 (si:dkey-91i10.3)


Basic Information

Item Value
gene id XLOC_037118
gene name si:dkey-91i10.3
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23009608 ~ 23023288 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073072
CTGAAGAGGCGTGTAAACACCGGCGGCTTTCACGGAATCTCAACACAGCAGTATTTGCTCACGGTAACAATCGAGTTTACTCAAGTTCATCTGCACAGTACGTGTGTGAGAGTCGCTTTTTGTACAGACTGCCATTACTGCTGTAGCAAGACTGATCAACACAGTGTGCTGGACTACGAGATCAGATATGTTTTCCAACTCATTGCTGAGGACTGGACTATTTTTATGTAAGCAAGACTGCAGTGGAATAAAATGCCTGACATCGATGTTTCTCAATGCTCGGACGACCAGTACACTAATAGGTGGAGATAAACAGAAAACCATGGACGACTTGGATGGTCCCAGCTTTCTGACATCTTTATACTGGCTGTTTGGAAAAGGGTATTTTCAAACGACTCATCAGATGCAGATAGAGCACAGCAAAATCTATGGGCCGCTTTGGAAGTCCAAATATGGGCCATTGGTTATTGTAAATGTGGCCAGTGCAGACCTCATAGAGCAAGTTCTGCGGCAGGAGGGTCGTCATCCCATCCGTACAGATATGCCACACTGGAGAGGCTACCGGAAACTCCGTAATCACGCCTATGGACCCCTCACAGAaATGGGTCCAGAGTGGCAGCGCATCAGAAGCATATTGAATCCTCGAATGCTGAAACCGAAACATGTGTCCAACTACACCAATGCTATTAATGGTGTAGTGAGCGACTTTATTGAGAAGATGGCTAAGCTAAAGACAACCAAAGGCAATGATGTTATGGTGTATGACGTGGCTGGAGAGCTGTACAAGTTTGCCTTCGAAGGAATATCCTCAGTGTTGTTTGAAACTCGAATGGGGTGTCTGAATGACGAGATTCCCGAAGAAACGCAGAAGTTTATCTTCTCTGTGGGGGAAATGTTTCGTCTTTCTCCCATTGTGATCCTTTTTCCTAAATTTCTCTGGCCCTATATGCCTTTTTGGAAGCATTTTGTGGCTGTTTGGGACCATTTGTTCAAAGTTGcggatgaaCTGGTGCAACAGAAGATGACCGAGATTCAGGAAAAGGTGAAAACTGGTAGTCCAGTGGAGGGCGAGTATCTCACACACCTGCTGATTAGTGAACAGATGTCCTTCACGGAGGTTTTGGGAAGCATTACTGAGCTTCTGCTGGCTGGTGTCGACACTACTTCAAACACTATTTCTTGGGCTCTGTATCATTTGGCACGAGAGCCGGAGATTCAGCAGAAGCTGCATGAGGAGGTGGTCAGCGTCTGTCCGGGTGACAAGACGCCCAGCAGTGATGACATTACCAGGATGCCACTGTTGAAGGCCATCGTTAGAGAGACACTTCGATTATATCCAGTAGTTCCTGGAAATGCTCGTGTTGTTGCAGAAAATGAAATAGTGGTTGGTGATCACCTCTTCCCTAAAAACACTCTGTTCCACCTCTGCCACTTTGCGGTGTCCTACGATGAGACGGTGTTCCCCGATCCTTTTGCCTTCCTCCCACAGCGCTGGATCCGAGAGCAGAAACAGTTAAGCCAGCATCCCTTTGGGTCCGTGCCGTTTGGTTTCGGCATCCGTGCTTGTCTGGGCCGCAGAGTGGCTGAACTGGAGATGTACCTTCTCTTGTCCCGGttAATCAAACGCTATGAAGTGCGTCCAGACCCTTCAGGAAAGACTGTGAAGCCGATCACACGAACTCTGCTGGTTCCTGCAACATCGATTGACCTGCAGTTTATTGACAGATAAAAAGAGTAAGAAGCATCTGTCAAAGCAAATGCGTCTGTATCAGTAACTGTGCACTTCTTTAATCTTCTACTTTATGTTTTTAGCCCTGTGAACACGTAGCACTTACACAAATACATGGCCTTGCTGTTgccttttttaggtattttttatttataacaaacagACTTATTTTACCACCAGAAATACTTATGAACTAAAGATGTACAATtattgttaaagggacagttcaccctcaCCCCCCACCCACAAAAAAAATTTCATGGTTTACTCATCACTTAAGCCTAGTTCCCGCTACATAACTTCAAACATTAGCAGATTGCTGTTTGCTGTGCCGTTCAGACTGCATGACTGCATTTGGGCTCAATCCTGATCATTTTTACCTTGCAGATTTTCACCCCATCATAGCCCGATCGTCGACGATCTGTAGTGTGAACTAGATATTACTTG

Function

symbol description
si:dkey-91i10.3 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1).

GO:

id name namespace
GO:0055114 oxidation-reduction process biological_process
GO:0016705 oxidoreductase activity, acting on paired donors, with incorporation or reduction of molecular oxygen molecular_function
GO:0004497 monooxygenase activity molecular_function
GO:0005506 iron ion binding molecular_function
GO:0046872 metal ion binding molecular_function
GO:0016491 oxidoreductase activity molecular_function
GO:0020037 heme binding molecular_function

KEGG: NA

ZFIN:

id description
ZDB-GENE-081105-124 Predicted to enable several functions, including heme binding activity; iron ion binding activity; and monooxygenase activity. Human ortholog(s) of this gene implicated in cerebrotendinous xanthomatosis. Orthologous to human CYP27A1 (cytochrome P450 family 27 subfamily A member 1).

Ensembl:

ensembl_id ENSDARG00000057262

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073072 True 2176 mRNA 0.46 9 23009608 23023288

Neighbor

gene id symbol gene type direction distance location
XLOC_037117 eaf2 coding upstream 1667 23003208 ~ 23007941 (+)
XLOC_037116 NA coding upstream 11548 22988941 ~ 22998060 (+)
XLOC_037115 tsn coding upstream 70098 22929675 ~ 22939510 (+)
XLOC_037114 rif1 coding upstream 207436 22780901 ~ 22802172 (+)
XLOC_037113 tnfaip6 coding upstream 229795 22764235 ~ 22779813 (+)
XLOC_037119 CR394542.1 coding downstream 22979 23046267 ~ 23046385 (+)
XLOC_037120 mmadhc coding downstream 26212 23049500 ~ 23056240 (+)
XLOC_037121 BX936418.1 coding downstream 100964 23124252 ~ 23162384 (+)
XLOC_037122 NA coding downstream 102868 23126156 ~ 23128231 (+)
XLOC_037123 map3k19 coding downstream 201473 23224761 ~ 23231203 (+)
XLOC_037110 NA non-coding upstream 366923 22642386 ~ 22642685 (+)
XLOC_037108 BX548053.3 non-coding upstream 432549 22576945 ~ 22577059 (+)
XLOC_037104 NA non-coding upstream 695991 22312733 ~ 22313617 (+)
XLOC_037095 CR536604.1 non-coding upstream 1023612 21984109 ~ 21985996 (+)
XLOC_037126 NA non-coding downstream 298546 23321834 ~ 23333979 (+)
XLOC_037127 NA non-coding downstream 340560 23363848 ~ 23456345 (+)
XLOC_037128 CR392363.1 non-coding downstream 340954 23364242 ~ 23367209 (+)

Expression


Co-expression Network

Homologous

species gene id symbol gene type chromosome NCBI id location
grasscarp (Ctenopharyngodon idella) CI01000009_08870258_08879256 NA coding CI01000009 null 8870199 ~ 8879256 (-)