G1784035 (LOC106581830)


Basic Information

Item Value
gene id G1784035
gene name LOC106581830
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18058334 ~ 18059136 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2042489
CCTTGGCATTTGAATGTGACTGAGTTCCCCTCCGTAGCATCCTGGCTCTGAGGTACAGAGTCCAATTTGGGTTGAGCTCCTGCAGTCACTGCTGCCCTCTCTGACCGGCTCTCTCTGGTCTGCCTTCTGGTCTCTCTGGTGGGCTCTGGAGACGGCTCTGGGACTCCCTTTGGGGGGGGTTTCAACGGATCTCTTGTATCCCTCTCAGGGGCTCTGCTTTGGGGGTGAGGGCTGGTCCTTGCAGCGCCCTGGCCTCCCAGGTGGTGCTGCAGGGTTGTGGAGCTGGCAGTCTTGGGGGGAGAGACACCAGGCTTTCTAGGGGCTTTGTCTGGCAGGTCCGCAGGAGGCTTGGGAGAAGTCACGACGGTGGTCTTGGGAGATGCTGCGCTGGTCTTCCATGCTGGAGTTTTGATCTCTGTGCTGTCTTTGGTCTCCCTGGTGAGAGTGGTGAGCCTGGTCTCAGTCCCGTCTCCTGTTTTGGCAGGGGATCGTTGGTCTGCGAGCAGGCCATTACTTGTGCGCTTGACTTCAGGTGAGTCAGTTGTCTTTGGGACAGGTGCTACCAGAGCCGAGGGACTCAGGCTGTAGAAGTAGTAACATATGACATTGTCAAAAGATTGAACACCTCACTGTGAAGAAATTGTGGAAATATTTTCTAGAAATTCAGCCAACTCACAAAAATGCTTACTCATGTAGTCACACAgtaatatcactatgcagggaatTTTATGAGATACATACTCACATGCCCGAGTCACAGCCTGAACCTAAAAAGGAATGGATACACACTGAATTTCCCCTCT

Function

NR:

description
myosin light chain kinase, smooth muscle-like isoform X1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2042489 True 803 lncRNA 0.53 1 18058334 18059136

Neighbor

gene id symbol gene type direction distance location
LOC110501528 LOC106581829 coding upstream 154331 17869458 ~ 17904003 (+)
LOC110501527 LOC106581827 coding upstream 236704 17818646 ~ 17821630 (+)
LOC110501524 LOC106586168 coding upstream 562526 17489320 ~ 17495933 (+)
LOC110501522 ermn coding upstream 713960 17342386 ~ 17344374 (+)
LOC110501521 cytip coding upstream 717409 17336457 ~ 17340925 (+)
kalrna LOC106581831 coding downstream 42383 18101519 ~ 18386130 (+)
LOC110501533 LOC106581832 coding downstream 332701 18391837 ~ 18395440 (+)
LOC110501534 cryba2 coding downstream 342745 18401881 ~ 18404554 (+)
LOC110501535 LOC106581833 coding downstream 347573 18406709 ~ 18410510 (+)
LOC110501537 LOC106581838 coding downstream 537242 18596378 ~ 18609528 (+)
G1784034 NA non-coding upstream 207 18057916 ~ 18058127 (+)
G1784033 NA non-coding upstream 1459 18056670 ~ 18056875 (+)
G1784031 NA non-coding upstream 5734 18052289 ~ 18052600 (+)
G1784021 NA non-coding upstream 16198 18041937 ~ 18042136 (+)
G1784020 LOC106581830 non-coding upstream 16581 18041508 ~ 18041753 (+)
G1784381 NA non-coding downstream 552148 18611284 ~ 18614191 (+)
G1784458 NA non-coding downstream 672033 18731169 ~ 18731408 (+)
G1784459 NA non-coding downstream 673098 18732234 ~ 18732519 (+)
G1784460 NA non-coding downstream 674420 18733556 ~ 18733779 (+)
G1784466 NA non-coding downstream 682819 18741955 ~ 18742191 (+)
G1783691 LOC106586162 other upstream 147108 17909900 ~ 17911226 (+)
G1783622 NA other upstream 315899 17741757 ~ 17742435 (+)
G1783087 NA other upstream 761975 17295953 ~ 17296359 (+)
G1782390 NA other upstream 1016661 17006034 ~ 17041673 (+)
G1781813 NA other upstream 1785224 16272389 ~ 16273110 (+)
G1784476 asic4 other downstream 707183 18766319 ~ 18767140 (+)
LOC110501548 LOC106586143 other downstream 1127352 19186076 ~ 19197714 (+)
ybey ybey other downstream 1511444 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 1557859 19603742 ~ 19627954 (+)

Expression


Co-expression Network