G1784381


Basic Information

Item Value
gene id G1784381
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 18611284 ~ 18614191 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2042848
TGAGACGCAAGATTTTGTTCTCGTACAGTCACACACCGTATCTGCGCGTGTGTATGGGTTCGTACGGGACTGAAACTGCTGAGAAGTTTAGCCTCGCGCTTCAACGCTCTTATTTGTTGCGGAAGTTGACCCACTATGTTGTTGACTTTGTGCATCTATGTCCTTTCGCTGAGTCTACAGTACCTTTTTTTAAGACTTTACTGACATTACTGTTTTGTGTATAAATGAATACACTACATTTTAAAGATTTgatttgtattgtattatactgaaaGAAACACTATGGACACTGAATCTACCATGAAATGAATACATACTAAAAAGAAACAACCAAATGCCCTTGTAAATCTAGattttacatgtacagtgccttcagaaaggattcacacCCTTTTACTTTTGTGtaactgatctacacacaatatacccCATAAAGTCAATGTGGAATTTGGTTTGTAGAACATTTTAGAAaggaataaaaaatgaaaagtcaataagtattcaacccctttgttatggcaagcatagatacgttcaggagtaaaaatgtgcttaacgaatcacataagttgcatggactcattctgtgtgcaataatagtgtttaacataatttttgaatgctacctcatctctgtaccccacacatacaatgaaTTATATGTAACTTCCctcagtcgagtagtgaatttcaaacacagattcaaccacaaagatgtgggaggttttccaatgcctcgctaattacactttggatggtgtatcaatacactcgaAAGATACAgccatccttcctaactcagttgctggagggGAAGGAAACTGCTAAGGGATTTtaccatgaagccaatggtgactttaaaatggctgtgataggaaaaactaaggatggatcaacaattgTAGTTACTCCCCAATACTAGCCTAATTGAGTgaaaggaaacctgtacagaaaaaaactattccaaaacaggcatcctgtttgtaataaggcactaaagtaatactgcaaaaaatgtggcaaagcaattcactttttgtcctgaatacaaagtgtcatgtttggggcaaatccaataaagCACATTATTGAGTACCAccatccatattttcaagcatagtgttggccgcatcatgttatgggtgtgcttgtaattgttaaggactggggagtgtttctggataaaaaataaatggaatggagctaagtacaggcaaaatcctagaggaaaacctggttcagtctgctttccaccagacactgggagattaattcacctttcagcaggacaataacctaaaacacaaggccaaatttacgctggagttgcttaccaagaagacagggaATGTTCCTTAGTTGCCGAGTTAGTATATTTACTTAGACAACCCAAAAAAGTAGATTTAACAATGACaattgttgtctagcaatgaacaacaaccaatttgacagagcttgaagaatattgaaaagaataatggaaaaatgttgcacaatccaggtgtggaaagctcttagagacttatccagaaagactcacagctgtaatcactgccaaaggtgcttctacaaagtattgactcaggggtgtgaatacttatgtaattgagatatttctgtatttcatttcaaataaattattacattttgaattcagtctaacacaagaaaatgtggaatcATTTTAGGtgcatgaatactttctgaaagcactgtatatgaTTTTCCAGGAGATTACAATACATTATGCAAATTCAGAATGACATAGCTCAAATAGAGATTTCCATTGTTtcccttttataccatggctataatttaacacatttgttGCTAGAAAGGTGTTAATTTGcctgtagaaatgtgttcaacatccactgaagtagctagcaagtttactagatggCTAGTTGCCATGGTcaccaaacagacttgctagtttagctaaccaaaccaatCAGTCCTAGCTTGTtattatgaaaatcgaattcaacaataccaatactgttttcaatttgacttttgctttcaaaagcaactaaaaaaacatgtaaaaatgaGCTATTGCCATTGAATTCTACCGCGCAAATATAGCATgtgttatttaagcaataagtcatataccacaaacaggtgccttattgctattataaactggttacaaacatcattaaaaaaaaacatttttgtcatacccgtgatataccacggctgcCAGCCAATCGGCAtttagggctcgaaccacccattTGAAAAAGGCAAATAATGCCCACTCTAGGATGCCCTTTGAGCCAATCTGGAAGGACTATTAAACAATGCAATGGTATGTCATCTAATTGTTATGACAAATCTTCAGTTAGTAGCTTTGTTTAGGTGAGGCGATGGCGTAATCGACATTTCCTGCTTTGCATTTTACACTGTTGACTATTCTCTGTTTACTACCAGTGTAAGTATTGGATTCAGTCGTTTGAAGTGTCCAGTGTATGTTTCTAATGGTAGTGTTAACCTAACTCATTATTAATCTAATTGAGAAACAGTGACTACTTGGAAATTCAATCCATATCCTTCCCATAAAGCAGCTGCCCCAAGTCTGTCCAGACCTATATTAAAAAGGTCCTGTGTACAGCACAAGCTGTAaattatgtcccccccccc

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2042848 True 2652 lncRNA 0.37 4 18611284 18614191

Neighbor

gene id symbol gene type direction distance location
LOC110501537 LOC106581838 coding upstream 1756 18596378 ~ 18609528 (+)
LOC110501535 LOC106581833 coding upstream 200774 18406709 ~ 18410510 (+)
LOC110501534 cryba2 coding upstream 206730 18401881 ~ 18404554 (+)
LOC110501533 LOC106581832 coding upstream 215844 18391837 ~ 18395440 (+)
kalrna LOC106581831 coding upstream 225154 18101519 ~ 18386130 (+)
LOC110502061 LOC106586148 coding downstream 325763 18939954 ~ 18951668 (+)
LOC110502062 NA coding downstream 372832 18987023 ~ 18988418 (+)
stat4 stat4 coding downstream 467497 19081688 ~ 19115216 (+)
stat1b LOC106586142 coding downstream 519543 19133734 ~ 19173341 (+)
LOC110501548 LOC106586143 coding downstream 571885 19186076 ~ 19197714 (+)
G1784035 LOC106581830 non-coding upstream 552148 18058334 ~ 18059136 (+)
G1784034 NA non-coding upstream 553157 18057916 ~ 18058127 (+)
G1784033 NA non-coding upstream 554409 18056670 ~ 18056875 (+)
G1784031 NA non-coding upstream 558684 18052289 ~ 18052600 (+)
G1784021 NA non-coding upstream 569148 18041937 ~ 18042136 (+)
G1784458 NA non-coding downstream 116978 18731169 ~ 18731408 (+)
G1784459 NA non-coding downstream 118043 18732234 ~ 18732519 (+)
G1784460 NA non-coding downstream 119365 18733556 ~ 18733779 (+)
G1784466 NA non-coding downstream 127764 18741955 ~ 18742191 (+)
G1784477 NA non-coding downstream 155576 18769767 ~ 18770058 (+)
G1783691 LOC106586162 other upstream 700058 17909900 ~ 17911226 (+)
G1783622 NA other upstream 868849 17741757 ~ 17742435 (+)
G1783087 NA other upstream 1314925 17295953 ~ 17296359 (+)
G1782390 NA other upstream 1569611 17006034 ~ 17041673 (+)
G1784476 asic4 other downstream 152128 18766319 ~ 18767140 (+)
ybey ybey other downstream 956389 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 1002804 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 1046918 19661109 ~ 19661926 (+)

Expression


Co-expression Network