Gene
RNA
| Item | Value |
|---|---|
| gene id | G1785098 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 18782739 ~ 18783086 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| Transposable element Tcb1 transposase |
| id | description |
|---|
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2043601 | True | 348 | lncRNA | 0.35 | 1 | 18782739 | 18783086 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| LOC110501539 | LOC106586149 | coding | downstream | 15031 | 18617526 ~ 18767708 (-) |
| LOC101268914 | wnt6 | coding | downstream | 213691 | 18533596 ~ 18569048 (-) |
| wnt10a | LOC106581835 | coding | downstream | 256672 | 18508003 ~ 18526067 (-) |
| LOC110502060 | LOC106586154 | coding | downstream | 354709 | 18427142 ~ 18428030 (-) |
| LOC110502115 | LOC106581727 | coding | downstream | 682020 | 18098805 ~ 18100719 (-) |
| LOC110501540 | LOC106581839 | coding | upstream | 170538 | 18953287 ~ 18962508 (-) |
| LOC110501541 | LOC106581840 | coding | upstream | 207434 | 18990520 ~ 19021140 (-) |
| LOC110501543 | LOC106581841 | coding | upstream | 251379 | 19034465 ~ 19036509 (-) |
| LOC110501547 | LOC106586143 | coding | upstream | 393180 | 19175567 ~ 19179266 (-) |
| LOC110501550 | LOC106581842 | coding | upstream | 434018 | 19217104 ~ 19229868 (-) |
| G1785077 | NA | non-coding | downstream | 41268 | 18741147 ~ 18741471 (-) |
| G1785066 | NA | non-coding | downstream | 59898 | 18722510 ~ 18722841 (-) |
| G1785062 | NA | non-coding | downstream | 63206 | 18719301 ~ 18719533 (-) |
| G1784940 | NA | non-coding | downstream | 265346 | 18516987 ~ 18517393 (-) |
| G1784829 | NA | non-coding | downstream | 423515 | 18358564 ~ 18359224 (-) |
| G1785218 | NA | non-coding | upstream | 162251 | 18945337 ~ 18945543 (-) |
| G1785231 | NA | non-coding | upstream | 191005 | 18974091 ~ 18974304 (-) |
| G1785233 | NA | non-coding | upstream | 192069 | 18975155 ~ 18975497 (-) |
| G1785249 | NA | non-coding | upstream | 199877 | 18982963 ~ 18983233 (-) |
| G1783895 | LOC106581829 | other | downstream | 878788 | 17869529 ~ 17903951 (-) |
| LOC110501514 | dapl1 | other | downstream | 1719291 | 17057104 ~ 17063550 (-) |
| b3galt1b | LOC106581793 | other | downstream | 2957525 | 15684423 ~ 15825221 (-) |
| G1781137 | lrp2 | other | downstream | 3214205 | 15567503 ~ 15568534 (-) |
| G1778224 | NA | other | downstream | 5452244 | 13279280 ~ 13330495 (-) |
| G1785753 | NA | other | upstream | 538102 | 19321188 ~ 19321859 (-) |
| znf142 | znf142 | other | upstream | 873196 | 19655763 ~ 19666201 (-) |
| G1786832 | LOC100136012 | other | upstream | 1562613 | 20345699 ~ 20346014 (-) |
| G1787166 | NA | other | upstream | 1607430 | 20390516 ~ 20455983 (-) |
