XLOC_003712 (CABZ01058277.1)


Basic Information

Item Value
gene id XLOC_003712
gene name CABZ01058277.1
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007122.7
NCBI id CM002895.2
chromosome length 45484837
location 43295275 ~ 43297633 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00007185
TGAAATATTAAGTTTAAACTTATATAGCTGAataaatttagttgaaacctgattattGTGTTAaagtaagttaaagtaacataaaaaacgTTTGTTTTTCACAGTGTATGTACAAAATAAGTATGGTCAGTACACATATGAAACtgcaagcttttattttgaatgcgtttaattgtgattaatcttttgacagcacttatatatatatatacgtaaagTAAGTTGGTTTGGATAAACATGGTTCCtaaattattaaaagttaaataaaataaaaatttaactcAATATGTCTACACTACTGGATAAAAGTCTTGTTGCTTATTCAAGTTTAAGGAACAGTAACTagtagcttgacttctagttgatcatttggtgtcagaagtggcttaaatgaaaggcaaaggcctctagatgacgcttatttgagcacaatgaaatctgatcatgtctgattttgaatgatttcatcaggacagtaaggtctgactctgctctgcTTCAGTCTCATCACTGatcagaaataatgtccagtatagaatataaagtcctgctgcagtggagacagaatgaatattgtgtctgactccatcatgagcttggaggactgcatccatacatctctgacatgactcaaatcactgattaataaagtcatctggaatggtgaagaaagcgttcctgcaggactcccagagttcatcaagagtctttggattcatcttcaacacctcctccccatcttaccccagacatgctcaataatgttcatatctggtgactgggctggccaatcctggagcagcttgaccttctttgctttcaggagctttgatgtggaggctgaagtatgaggagcgctatcctgctggagaattgtccctctcctgtggtttgtaatgtaatgggcagcacagatgtcttgatatctcaggctgttgatgttgcagatctctcgcacgcccccatactgaatgcaaccccaaaccatgatttctcctttaccaaacttgactgatttctgtaagaatcttggctccatgcaggttccagtaggtcttctgcagtattgtgatgattgggatgcagatcaacagatgattcatcagagaaatccaccttctgacacttttccaaacgatcaactaaaagacaagttattatttgttgctcttacatctTCCAGTGCTCATTATAAGTTAGCGCACCccttttgaaaataaatagttttcacCATTCCTCagtaaacattttaatagtttattatattttattaaattgttatatc

Function

GO:

id name namespace
GO:0046034 ATP metabolic process biological_process
GO:0009123 nucleoside monophosphate metabolic process biological_process
GO:0009126 purine nucleoside monophosphate metabolic process biological_process
GO:0009127 purine nucleoside monophosphate biosynthetic process biological_process
GO:0006754 ATP biosynthetic process biological_process
GO:0009141 nucleoside triphosphate metabolic process biological_process
GO:0009142 nucleoside triphosphate biosynthetic process biological_process
GO:0009144 purine nucleoside triphosphate metabolic process biological_process
GO:0009145 purine nucleoside triphosphate biosynthetic process biological_process
GO:0009161 ribonucleoside monophosphate metabolic process biological_process
GO:0009167 purine ribonucleoside monophosphate metabolic process biological_process
GO:0009168 purine ribonucleoside monophosphate biosynthetic process biological_process
GO:0015985 energy coupled proton transport, down electrochemical gradient biological_process
GO:0015986 ATP synthesis coupled proton transport biological_process
GO:0009199 ribonucleoside triphosphate metabolic process biological_process
GO:0009201 ribonucleoside triphosphate biosynthetic process biological_process
GO:0009205 purine ribonucleoside triphosphate metabolic process biological_process
GO:0009206 purine ribonucleoside triphosphate biosynthetic process biological_process
GO:0005753 mitochondrial proton-transporting ATP synthase complex cellular_component
GO:0016469 proton-transporting two-sector ATPase complex cellular_component
GO:0045259 proton-transporting ATP synthase complex cellular_component
GO:0045263 proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0000276 mitochondrial proton-transporting ATP synthase complex, coupling factor F(o) cellular_component
GO:0015078 proton transmembrane transporter activity molecular_function

KEGG: NA

Ensembl:

ensembl_id ENSDARG00000105373

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00007185 True 1285 lncRNA 0.37 2 43295275 43297633

Neighbor

gene id symbol gene type direction distance location
XLOC_003711 foxg1b coding upstream 179026 43114108 ~ 43116249 (+)
XLOC_003710 CABZ01080006.1 coding upstream 217934 43070883 ~ 43077341 (+)
XLOC_003708 NA coding upstream 247254 43035558 ~ 43048021 (+)
XLOC_003709 CABZ01092982.1 coding upstream 250326 43044826 ~ 43044949 (+)
XLOC_003707 NA coding upstream 411977 42839850 ~ 42883298 (+)
XLOC_003713 CU929458.1 coding downstream 65442 43363075 ~ 43368382 (+)
XLOC_003714 sult6b1 coding downstream 77693 43375326 ~ 43388063 (+)
XLOC_003715 vipb coding downstream 103568 43401201 ~ 43414172 (+)
XLOC_003716 slc29a1b coding downstream 122176 43419809 ~ 43458612 (+)
XLOC_003717 NA coding downstream 234949 43532582 ~ 43535890 (+)
XLOC_003369 CR854846.2 misc upstream 27172193 16122786 ~ 16123082 (+)
XLOC_003318 CR450764.6 misc upstream 30583279 12711700 ~ 12711996 (+)
XLOC_003317 CR450764.16 misc upstream 30601012 12693967 ~ 12694263 (+)
XLOC_003316 CR450764.11 misc upstream 30609676 12685304 ~ 12685599 (+)
XLOC_003315 CR450764.18 misc upstream 30615247 12679732 ~ 12680028 (+)
XLOC_003703 LO017916.1 non-coding upstream 669788 42625371 ~ 42625487 (+)
XLOC_003718 CABZ01073015.1 non-coding downstream 345525 43643158 ~ 43646674 (+)
XLOC_003722 NA non-coding downstream 513996 43811629 ~ 43817356 (+)
XLOC_003723 NA non-coding downstream 523922 43821555 ~ 43822853 (+)
XLOC_003724 NA non-coding downstream 646249 43943882 ~ 43950660 (+)

Expression


Co-expression Network