XLOC_037122


Basic Information

Item Value
gene id XLOC_037122
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23126156 ~ 23128231 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00074897
ggcgtgactcctttttcattgcccgggatttagcaggcagacgcagcttctgcaatggtcgacattaactgctcccagcagcggatctgattaacacgataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcCGAGGTGCATGCAGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacaagtatccatcaaaactgtatacatttgagatatatcagagactctttgtggggctggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatcttcccattcttatttaattgttattgacaggaaagtctgtttatctgtttttcctagtgtatattgtgcttacaatatagaaacgaagatttattttctaaggttacagccagaagttaattgaattaattttaaatcaaatatgcatggttaattttatttagataattaagttcataatacttaattaaaataagtacagtcactatatagcaatgtataagtaagttaagttt
>TCONS_00074898
tgtgggggttcagtttgttagcgctaacttagctaaagttagctcacctaagttatagcagcacattaaggatggatattaaatgcagaaatgtatgcaacagttaagtagtttgtgtttaacgtaagagaaagtacaacttaaagtttgtgttttagagatttattccataagttttttttaatgctgcatagtgaataaattacagatttacaatttattttaacttaaattacatttactgatgtttacagaaccatttaaactgtatgcacctcattctaaaatgcatgttcttggtctttagataccaaagtgattttgttacctgtggatcttcaaacttcacatccagagttgtgaggaatcCGAGGTGCATGCAGCTGCCCACAagaaaaatttgccatcagcccaacacagtttggattatcataggactgtcagaggtttgccaaacctgtcaaatgcatgatggctcctgtttggacttaccgatgtcctcgacaagtatccatcaaaactgtatacatttgagatatatcagagactctttgtggggctggacattatgcatcctaaatcttcatcaaaatatgcaaatctcctcactgagttgccttagatgatttctcaataggatctggtattattaatgtttttatttatgtattgtgtacgtgtagccacattaatggcctattttgtagtcactattaaaaggaacattgattgatattgaatacatgttatggtctttaatccatc

Function

GO:

id name namespace
GO:0044085 cellular component biogenesis biological_process
GO:0016072 rRNA metabolic process biological_process
GO:0022613 ribonucleoprotein complex biogenesis biological_process
GO:0034470 ncRNA processing biological_process
GO:0006364 rRNA processing biological_process
GO:0090304 nucleic acid metabolic process biological_process
GO:0006396 RNA processing biological_process
GO:0006139 nucleobase-containing compound metabolic process biological_process
GO:0006725 cellular aromatic compound metabolic process biological_process
GO:1901360 organic cyclic compound metabolic process biological_process
GO:0010467 gene expression biological_process
GO:0042254 ribosome biogenesis biological_process
GO:0042273 ribosomal large subunit biogenesis biological_process
GO:0043170 macromolecule metabolic process biological_process
GO:0034641 cellular nitrogen compound metabolic process biological_process
GO:0034660 ncRNA metabolic process biological_process
GO:0046483 heterocycle metabolic process biological_process
GO:1990904 ribonucleoprotein complex cellular_component
GO:0044428 obsolete nuclear part cellular_component
GO:0070013 intracellular organelle lumen cellular_component
GO:0005634 nucleus cellular_component
GO:0031974 membrane-enclosed lumen cellular_component
GO:0031981 nuclear lumen cellular_component
GO:0043233 organelle lumen cellular_component
GO:0005730 nucleolus cellular_component
GO:0003676 nucleic acid binding molecular_function
GO:0003723 RNA binding molecular_function

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko05016 Huntington disease
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00074897 False 792 lncRNA 0.36 3 23126156 23128231
TCONS_00074898 True 765 lncRNA 0.35 2 23126543 23127995

Neighbor

gene id symbol gene type direction distance location
XLOC_037120 mmadhc coding upstream 69916 23049500 ~ 23056240 (+)
XLOC_037119 CR394542.1 coding upstream 79771 23046267 ~ 23046385 (+)
XLOC_037118 si:dkey-91i10.3 coding upstream 102868 23009608 ~ 23023288 (+)
XLOC_037117 eaf2 coding upstream 118215 23003208 ~ 23007941 (+)
XLOC_037116 NA coding upstream 128096 22988941 ~ 22998060 (+)
XLOC_037123 map3k19 coding downstream 96530 23224761 ~ 23231203 (+)
XLOC_037124 map3k19 coding downstream 104670 23232901 ~ 23234064 (+)
XLOC_037125 tmem163a coding downstream 127179 23255410 ~ 23313342 (+)
XLOC_037126 NA coding downstream 193603 23321834 ~ 23333979 (+)
XLOC_037127 NA coding downstream 235617 23363848 ~ 23456345 (+)
XLOC_037110 NA non-coding upstream 483471 22642386 ~ 22642685 (+)
XLOC_037108 BX548053.3 non-coding upstream 549097 22576945 ~ 22577059 (+)
XLOC_037104 NA non-coding upstream 812539 22312733 ~ 22313617 (+)
XLOC_037128 CR392363.1 non-coding downstream 236011 23364242 ~ 23367209 (+)
XLOC_037131 BX957274.1 non-coding downstream 568693 23696924 ~ 23700456 (+)
XLOC_037136 NA non-coding downstream 756125 23884356 ~ 23887281 (+)

Expression


Co-expression Network