G1785379


Basic Information

Item Value
gene id G1785379
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19258031 ~ 19259223 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2043905
ATGCAGTAGAGTTGGGCAGTATCGTCATACCGTTTCTCTCATCCCGAGATTTATGTATTATCGGCTTAGTACACAAGAGGGCGCCAAAAAAGACAATTAGCACAAGTAATAGCGCATTTCCATAGgggctgctagctaaatatgctaacaagcgcaaacaaaaataaatgaaatagcaaagacaggcaatccagctcataaagttatacgtGTATAGGTAGGACTTACTTAATGTCCTTTTGTGAGTTTGGACTTTTACAAGCGACTGTAAACGAAAGACATTACTCAAATGAACAAAGTTGAGGCATGCTTGTCTGAAGCAAGAACAGTACTGGTCGCTACAGCAACGAGCCTGCCTGCTCGAAAaagagtgggggaggaggagcagacaGGCTGAGAAATGAGAGGAGAAAAACACAAGGAAATCTAGACAGCACTGGCCCTCTAGCCTACAGATAAGTcatccaaagggctttgacttctcaaacgCCGCAGAAAGCTAACACTATGATTCACCCTCACTTAGATAACTAGCTAATTAAATTTAGGGGTCGCGAGATTCTGCGTTCTTCACACAGGAAAAATAGTCAAATCTTGACGTGTTTTCTAAAGTCAGATCTAAAAagcttcttattgtaatttctgctcggTGTCAGacattttgtgcttcagttgcacttctccatTCAAAATGCCCGTTCATGAATTCTATCACTGATAGTCAACGCTCTGACAGTGTAGCTactttctctggtacttttctcagtgtagccagcctacttttctctggtaaaatGAAAGATTAACTTTAAgtaaaacattaggaaatgtagctggctacattctaTGATTAACATTTAGAAATATGATGGTCAtgcattgttttgtttttatacaAAAATGCCTTGCTTTGTCATTGTAAGCTCATATGGCTGCCTGCCAAATAGTGTTGCGCTTGTGTTGTCATCTGAATGTTCATTTATTTTCAGACAAATGTGTggcactaatgtattttctgtgaagcaAAAAAACTCTGACTTTCAATAGAAAATGCGATCCCTGTCAataccacagctggactcacctgctcccgcTTTCTACGGTTGcactatttacaaacaaacaggctcaactgttctggggaactactgtatgcttcataatgtgacaggtgaaataaagaacgtattgca

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2043905 True 1193 lncRNA 0.40 1 19258031 19259223

Neighbor

gene id symbol gene type direction distance location
LOC110501551 wdr75 coding upstream 1121 19230028 ~ 19256910 (+)
LOC110501549 LOC106581842 coding upstream 44958 19200139 ~ 19213143 (+)
LOC110501548 LOC106586143 coding upstream 64512 19186076 ~ 19197714 (+)
stat1b LOC106586142 coding upstream 84690 19133734 ~ 19173341 (+)
stat4 stat4 coding upstream 142815 19081688 ~ 19115216 (+)
LOC110501555 asnsd1 coding downstream 43156 19302379 ~ 19308366 (+)
asnsd1 asnsd1 coding downstream 48699 19307922 ~ 19311501 (+)
ankar ankar coding downstream 54591 19313814 ~ 19324650 (+)
adat3 NA coding downstream 78393 19337616 ~ 19338467 (+)
pms1 pms1 coding downstream 91401 19350624 ~ 19414697 (+)
G1785365 NA non-coding upstream 74537 19140783 ~ 19183494 (+)
G1785363 NA non-coding upstream 76085 19138589 ~ 19181946 (+)
G1785358 NA non-coding upstream 124707 19132974 ~ 19133324 (+)
G1785299 NA non-coding upstream 131051 19112567 ~ 19126980 (+)
G1785375 slc40a1 non-coding downstream 1418 19260641 ~ 19265142 (+)
G1785412 NA non-coding downstream 20502 19279725 ~ 19279935 (+)
G1785413 NA non-coding downstream 21253 19280476 ~ 19282878 (+)
G1785415 NA non-coding downstream 24769 19283992 ~ 19284334 (+)
G1785416 NA non-coding downstream 25321 19284544 ~ 19284980 (+)
G1784476 asic4 other upstream 490891 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1035305 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1346805 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1515596 17741757 ~ 17742435 (+)
ybey ybey other downstream 311357 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 357772 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 401886 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 1021790 20269646 ~ 20281952 (+)
G1786330 NA other downstream 1023958 20283181 ~ 20284571 (+)

Expression


Co-expression Network