G1785375 (slc40a1)


Basic Information

Item Value
gene id G1785375
gene name slc40a1
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19260641 ~ 19265142 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2043901
TTTTTCTGTATTTAACAATGATGGGAGATTATGGACAGTACATTATGGTCCATTGGAACAGTGTACTCATGATTTTCTTGGTTTATgcattagggctgggaattgctagGGACCTTACGatgtgccgatacgatatgtattgcggttctcatgattctatatgtattgcgatttgatgttccaaacatttaGCTcactatgtctgctgcagagagacgagaGCATGAGAAAACAACTAGTTTTGATCTGTCAGGGAAATAAGTCCTGAAAATATGTTGGCTCGCTGTTTTAAAAAGATGCTATGGGATGAAAAATACCGGGGTTTTGATGCAGGTACAGCGGACCAGCGCTAGTGTACACTACATACAGtggcaaaaaaataacaaatattgATCTGTAACAATCAACAACAAAATCCCATTACTATTATGCATGAGAGCATTGCTTTGTAAACACGAGGCAGAGAAATTTCACAAATCGTTCAGAAAACATTTATTTGCTAATTGAGAAGTTAACACttatataaaaacatttaaaaacaagaCCAACATTTAAAGACGACAATCTGACAATGTTCAACTACAAAAAATGTACATCCAGTACAGTGTATCAAATAGTCTATAAATTGACGGCAATTGTTATGACAAATATAAAATTGCCTTGTATGAAGTATTCCTGAATAAATGTTAAGAACAAATGCGCTGTTATTTTCTGGAGAATGTGCTTACTTTACATTTGAGGGGTAACCCATGTCAAACATCAACACAGAGCTCAGTTCCTGCCATTTCTCCACAGAACACCAGCTGCAGTTCCACAAACCTGCAGTCCTGTCTGACTCTAGCTCTGGGCGGTGTATTAAAAGACTCTTGTAGGCAGATGTAAAGAAAGGCCTCACTGTTCTCTTAAAGTGCTGTGGCTATTCTCTGCACCAATCCTAATATTTTCATTACAAAATCTCAGCCATGGTTTTCATGGGCAGCGGTAATAACCGTAGTCTATTGTGAACATGTGAGTATTAGTGAGTCAAaccacatttaaaaaataaataaggcTTCTGCAAACATTTTAGTGGTGTTGGAGAGCTCCAAGAGCTACGAACGTACAGTTCTGCCTGGCAACCACCTGGTTGGTGTAATGGCAGTCCCTGGCCAGCTGAGACAACCTGAAGATGCAATCAGTTTTTCATGCTCACCTTGTGTCTGGGTTTACGATTgcgctgtgtgtgtgcatttgtggcAGAGCTTAGCGTAATGATGGCTCGGTATCATGGGCCCGCCAGGAAACTAAAAGTCCTTCAGTTAACCTCAAAGTGGGGAGGCAGGAGCTCAGCCATTATTATGGACATAGTACAATCACttaaagtattcatactccttgacttattccacattgttacagcctgaattcaaaatgtattacttTTTTTCTCTTCGCCATCtacacaatatcccacaatgacaaaatgaaaacatttttttattcatCTAGTTTctgtaagtattcatacccctgtaccttttggcagcgattacagcggtGAGCTTTTCTGGGTAAGTAAGCTTTCCAcgtctggattgtgcaacatttgcccatttttattattttcaaaagtcttcaagctttgtcaaattggttgttgatcattgcaagacaaccattttcaggtcttgccatttGATTTTCAATTAGATATGTCAACTGTAACTCGTTCACATTCACcctcttcttggtaagcaattccattgtagatttggccttgttttcggttattgtcctgctgaaaggtgaattaatctcccagtgtatGTTGGAAAGCGGACAAACCAGGTTTTCCACTAATTTTGCCTGTTTGGCTTCATTCTGTTTCTTTTGTTGTTGTACTATCCAGTCCTTaactattacaagcatacccataacatgatgcagccactactatgcttgaaaatatggggaTTGGTACTGGATTTACCACAAACAACACAACTATGTTTTATtcagtacaggcttccttttcactttgtcaattttGTTCGTAttgctgttgatccatcctcagttttatccTTTCACAGCCTTTAAACTAgtggttttaaagtcaccattggcctcatgctgAAAACCCAGAGCGGTTTCCTTccactccggcaactgagttaggaaggatgcctgtatctttgtagtgactgcgtgtattgatacaccatcaaaagtgtaattaataacttcaccatgctcaaagggatattcaacatctgctttttttaaaaacatttttgctcatctaccaatagttgccgccctttgtgaggcattggaaaaccttgctggtctttgtggttgaatctgtttgataTTCAATGCTCGGCTGAGGGACCTTAAAATTATTtggatgtgtggggtacagaggtgagttagtcatttaaaaaatcatgttaaaatttttactcctgaacttatttaggcttgccataacaaaggggttgaattcttattgactctacatttcagcttttcatttttaatttgaAAATATGAAACAATTCCACTGACaatatggggtaatgtgtgtaggctAGAAACACAATCTCAATTTGAAATCAGGCTATaacacacaatgtggaaaaagacaaggtGTGTGAATACCTGTGTAGAAATCAATTATGACAAATAACTAGTAGTTTACATTGTTATACTATAGTTAAGAGAATTGCGGGGAGGGGGTCGAGATCTTAAGTGTACACAAGTGTCTACAATAGCGTTAATGAGCTTATACAAGTTTCACTGTCACTTCACATCAAAAATGATTTGGAATGCTCAAACAAAATGTAACAATCCTGTTTTCCCCTCACTTCCTTTAAGCTATATAAGAAGGTCCACTTTGGTCATTGAGTGCATTGTTAATGTGAATGCACAGTTTCCCAGCTGTTTGCTATAGCTAGTACATTAGCACCAACATTTGGTGAGAAAGACAATAGTGACACATTGAGAATATACACCTGAGTGTACAcaacattaggaatacctgcctaatattgagttgcacccccttttgccctcagaacagcctcaatcagTTGGTgtatggactctacaatgtgtcaagcgttccacagggatgctggcccatgttgactccagtgcatcccacagttgtcaagttggctggctgtcctttgggtggtggactattcttgatacacacgggaaattgttgagcgtgaaaaacccagcagcgtggcagttcttgacacactcaagccggtgcacctggcatctactacaataccccgttcaaaggaacttaaatattttgtcttgcctattcaccctccatggcacacacacaatccatgtctctatcTCAtggcttaaaatccttctttaacctgtctttgAAGTGGATTTAGGTATCACCAATAAGGATCGTAacgttcacctggtcagtccgtcatagaaagagcaggtgttcctaatattttgtacactccaTGTATAGATAAACATAAGTATTTGCGCTCCttgaataaatacatttgcataaCCCTTATAACCGCGTATTAAAGAGAAATGAGCAAGAACTGATCATCTAAAGCATTAATTACTAAAGCTGAAATAACAAATGCTAACACAAATTATTTATAGCACAAATAAACTACTTAGAAACAAATGGCTTCAAAGTGGAAATGGGAATCCCACGGCTGATGCAGAGCTGTAATGAGATGCAAACAGCATTAGCACATACTTGAGCAGTACCCAGCTGTAACCCTAGTAACTGCAAGTGGCAATACCTGCAATTTTCCACATTTGAATTTAGCTTCTAAGCTGAATGCATGACAAGACTGCTACATTTTAAATATTGGAAGTAGGGAAGTGGTCTTTTTGTGACACTTATGACCTCATGATCTGGGTTGTTTGTCTGAGAGAGACTCCTTCTCTGTGTCTGCGGCCGCACTACCCTCCCTCAGCGAACGGTAAATGCTATCTACAATGACAAAGGACAGCACCTGCTAGGGTAAGGCGCAAAAGTAAATACATTAGTCCTGCCGGGGCTACAAGCATGTTTAGGTTGATGACTAGGGGGCTGGAGGAGAAGGGGGTATTTGTGTACTGCAGGCGGAGCTGTAAGCAGGGAAAGAGTCTCTTTAATGGGTTACACCGTGGTGGGAAGCAAGGAGGGAGAGTCGGGGAGGGCCTGAGTCTGCTGCTCTGGAGACCAGCAGAGGAAGAGGCGCCGCCCGAGGCTCTTAAAGGCAAACCTGAAGTACATTATGTGGCCCATAGCCACGAATGAGACGGAGAGGATGACGAGCAGGCCGAAGGCCTCTGGGTTGGGCGCCAGAATCACCATGATGAAATGCAGAAGGTCTAGGAGGTAGTTCATGGAGTTCTGGACGCCGTTGATCAGTCCCCTCTCCGACTCGATCACATTCTCTTGGATGAGCTGGGTCACGGTTAAGTCAAAG

Function

symbol description
slc40a1 Enables iron ion transmembrane transporter activity. Acts upstream of or within several processes, including bone mineralization; hemoglobin biosynthetic process; and hemopoiesis. Predicted to be integral component of membrane. Predicted to be active in basolateral plasma membrane. Is expressed in digestive system; gill; nervous system; solid lens vesicle; and yolk syncytial layer. Used to study iron deficiency anemia. Human ortholog(s) of this gene implicated in hemochromatosis type 4. Orthologous to human SLC40A1 (solute carrier family 40 member 1).

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2043901 True 4463 lncRNA 0.41 2 19260641 19265142

Neighbor

gene id symbol gene type direction distance location
LOC110501551 wdr75 coding upstream 3731 19230028 ~ 19256910 (+)
LOC110501549 LOC106581842 coding upstream 47568 19200139 ~ 19213143 (+)
LOC110501548 LOC106586143 coding upstream 67122 19186076 ~ 19197714 (+)
stat1b LOC106586142 coding upstream 87300 19133734 ~ 19173341 (+)
stat4 stat4 coding upstream 145425 19081688 ~ 19115216 (+)
LOC110501555 asnsd1 coding downstream 37237 19302379 ~ 19308366 (+)
asnsd1 asnsd1 coding downstream 42780 19307922 ~ 19311501 (+)
ankar ankar coding downstream 48672 19313814 ~ 19324650 (+)
adat3 NA coding downstream 72474 19337616 ~ 19338467 (+)
pms1 pms1 coding downstream 85482 19350624 ~ 19414697 (+)
G1785379 NA non-coding upstream 1418 19258031 ~ 19259223 (+)
G1785365 NA non-coding upstream 77147 19140783 ~ 19183494 (+)
G1785363 NA non-coding upstream 78695 19138589 ~ 19181946 (+)
G1785358 NA non-coding upstream 127317 19132974 ~ 19133324 (+)
G1785412 NA non-coding downstream 14583 19279725 ~ 19279935 (+)
G1785413 NA non-coding downstream 15334 19280476 ~ 19282878 (+)
G1785415 NA non-coding downstream 18850 19283992 ~ 19284334 (+)
G1785416 NA non-coding downstream 19402 19284544 ~ 19284980 (+)
G1785417 NA non-coding downstream 21033 19286175 ~ 19287274 (+)
G1784476 asic4 other upstream 493501 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1037915 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1349415 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1518206 17741757 ~ 17742435 (+)
ybey ybey other downstream 305438 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 351853 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 395967 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 1015871 20269646 ~ 20281952 (+)
G1786330 NA other downstream 1018039 20283181 ~ 20284571 (+)

Expression


Co-expression Network