G1785413


Basic Information

Item Value
gene id G1785413
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19280476 ~ 19282878 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2043940
TTTTTTATTGCTTTTATGTATCCCAGGACTCACTCGAAAACAGTGGCAAGTGTTATAGATGTGGACTACCCCAGATAAATAAATGCACAGTAGCCTATCTATTTGCTTACCTGTCAGGAAGAAAAGTGAAAATACATATAAAAACACTAAGATAATAAATGATGGATAATCCATTGCTTGTGGCATAACAAACACAAATTATCATGTTGTGTCGTATATGCAAGCAGGCTGTATGGAGGGAAATGCTTGAAGCAGCACTGCTTGTTTATTTTCTGTGCATGTGTGCATAAAGTTGGTCAGTCTATTTGGGTCTAAAACCTACAAATGTATATGCGCAAGGAAGGGGGATAGGAGATAATAATATTACTGTCTCTGTTACATAATCTAATATCAGTCATTAAACCAGCTTCCCCTATCAGTTGGCTATATCGCAGGGGTCGTATTTTCAAAAC
>TU2043941
TTTTTTATTGCTTTTATGTATCCCAGGACTCACTCGAAAACAGTGGCAAGTGTTATAGATGTGGACTACCCCAGATAAATAAATGCACAGTAGCCTATCTATTTGCTTACCTGTCAGGAAGAAAAGTGAAAATACATATAAAAACACTAAGATAATAAATGATGGATAATCCATTGCTTGTGGCATAACAAACACAAATTATCATGTTGTGTCGTATATGCAAGCAGGCTGTATGGAGGGAAATGCTTGAAGCAGCACTGCTTGTTTATTTTCTGTGCATGTGTGCATAAAGTTGGTCAGTCTATTTGGGTCTAAAACCTACAAATGTATATGCGCAAGGAAGGGGGATAGGAGATAATAATATTACTGTCTCTGTTACATAATCTAATATCAGTCATTAAACCAGCTTCCCCTATCAGTTGGCTATATCGCAGGGGTCGTATTTTCAAAACGCAGATCATCAAAAAATCTGCGTTTTTAAACCATTtcacctgtgttttatatagaatGTCAacagtattatttttttttgcttAACTAGAGTGATCAGGGGCAtgcaactatagttttccttcacagaaaatacattagtgcaacatATTCGGaagaaaatagcttcattttcatcagctgacaacagaagtgcaacaCAAGTAAATTCTTAGAGTGAAAAAGCAAGGCCTTTTTTGCAAATAACTATGAATGGTCCAACATATGTTTATGATTAGAAAGAATGgtgccagctacatttcctagtGTTTTGCTTGAAGTTAACCTTGCATTTTACCAGAGGCTGGCTACActgagaaaagtaccagagaaaagtagctacacatcagtcagagcaCTGTCTGTTGATAGAATGCCTGTTCATGAATGTTCATCCAaagtggagaagtgcaactgaagcacaaaattaGTCTGATGCCGAGCAGAAATTACATTAAGAAGCATTATACAgcgcattcgggaagtattcagaccccttcactttttccacattttgtttagttacagccttattataaaatgtattaaattaattgttttcctcatcaatctacacacaataccccataatgacaaagcgaaaacaggatttttagaaaaaataacaaataacttatttacataagtattcagaccctttgctatgagactcaaaattgagctcgggtgcattatttttccattggtcatccttgagatgtttctacaacttgattggagtccacatgtggtaaattaaattaattggacatgatttggaaaggcacaaagtcccatagttgacagtgcatgtcagagaaaaaaccaagccatgaggtcgaatgaattgtcaGTAGAggtccaagacaggattgtgtcgaggtgcagatctggagaagggtagaaAAGAATTCTGcctcattgaaggtccccaagaacacaatggcctctaacattcttaaatggaagaagtttggaaccaccatgacTCTAGAGCTCCTAGAGcttgccgcccggccaaactgagcaattggggaagaagggcctttgtcagggaggtgaccaagagcctaatggtcactctgacagagctctagagttcctctgtggaaatgggacaaccttccagaaggacaaccatctctgcagcactccacctttatggtagtggccagacggaagccactcctcagtaaaaggcacatgacagcccgcttggagtctGCCTTTTGGCAACTAAAGGAATCTCAGACCAtaagaagcaagattctctggtctgatgaaaccaagatttaactctttggtaTGAATgaaaagcgtcacgtctggaggaaacctggcaccatccctaaggtgaagcatggtggtggcagcattatgttgtggggatgtttttcagcggcagggactgggagactagtcaggatcgagggaaagatgaacagagcaacgtACAGAAatatccttgatggaaacctatctccaggacctcagactggggcaaaggttcaccttccaacaaggaCAACAAacttaaacacacagccaagacatcttaggagtggtttcgggacaagtctctgaatgtccttgagtggcccagccagagcctgtacttgaacctgatcgaacatctctggagagacctgaaaatagctgtgcaccgaCAATCCCCATCtcacctgacagagtttgagaagatctgcagagaagaatgggagaaactccccaaatacaggtgtgccaagcttgcagtgtcatacccaagaagacttgaggctgcaaTCGCtaccaaatgtgcttcaacaaagtacagagtaaagggtctgaatacttattgaaatGTGCTATTTcagtattattataattttttgcaAAAATGCCTAACAcccagtttttgttttgtcattatgg

Function

NR:

description
PREDICTED: zinc finger protein 271-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2043940 False 452 lncRNA 0.37 1 19280476 19280927
TU2043941 True 2403 lncRNA 0.41 1 19280476 19282878

Neighbor

gene id symbol gene type direction distance location
LOC110501551 wdr75 coding upstream 23566 19230028 ~ 19256910 (+)
LOC110501549 LOC106581842 coding upstream 67403 19200139 ~ 19213143 (+)
LOC110501548 LOC106586143 coding upstream 86957 19186076 ~ 19197714 (+)
stat1b LOC106586142 coding upstream 107135 19133734 ~ 19173341 (+)
stat4 stat4 coding upstream 165260 19081688 ~ 19115216 (+)
LOC110501555 asnsd1 coding downstream 19501 19302379 ~ 19308366 (+)
asnsd1 asnsd1 coding downstream 25044 19307922 ~ 19311501 (+)
ankar ankar coding downstream 30936 19313814 ~ 19324650 (+)
adat3 NA coding downstream 54738 19337616 ~ 19338467 (+)
pms1 pms1 coding downstream 67746 19350624 ~ 19414697 (+)
G1785412 NA non-coding upstream 541 19279725 ~ 19279935 (+)
G1785375 slc40a1 non-coding upstream 15334 19260641 ~ 19265142 (+)
G1785379 NA non-coding upstream 21253 19258031 ~ 19259223 (+)
G1785365 NA non-coding upstream 96982 19140783 ~ 19183494 (+)
G1785415 NA non-coding downstream 1114 19283992 ~ 19284334 (+)
G1785416 NA non-coding downstream 1666 19284544 ~ 19284980 (+)
G1785417 NA non-coding downstream 3297 19286175 ~ 19287274 (+)
G1785419 NA non-coding downstream 5081 19287959 ~ 19288171 (+)
G1785424 NA non-coding downstream 10998 19293876 ~ 19294170 (+)
G1784476 asic4 other upstream 513336 18766319 ~ 18767140 (+)
kalrna LOC106581831 other upstream 1057750 18101519 ~ 18386130 (+)
G1783691 LOC106586162 other upstream 1369250 17909900 ~ 17911226 (+)
G1783622 NA other upstream 1538041 17741757 ~ 17742435 (+)
ybey ybey other downstream 287702 19570580 ~ 19572946 (+)
LOC110501568 cnot9 other downstream 334117 19603742 ~ 19627954 (+)
G1785947 znf142 other downstream 378231 19661109 ~ 19661926 (+)
asb1 asb1 other downstream 998135 20269646 ~ 20281952 (+)
G1786330 NA other downstream 1000303 20283181 ~ 20284571 (+)

Expression


Co-expression Network