G1786380


Basic Information

Item Value
gene id G1786380
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 19687765 ~ 19688406 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2044998
TCTCACCCCTGAGTAGATACTTTGTAGAAgaaactttggcagcgattacagctataagtctttctgggtaagtctctaagagctttccacgcctggattgtgcaacatgttcctattattattttcaaaattcttcaagctctgtcaaattgtttgttgatcattgcaagacaaccattttcaggtcttgccatagattttcaagtagatttcattcaaaactgtaactcggccactcaagaacattcactgtcttcttggtaagcaactccagtgtatatttgtccttgtgttttaggttactgtcctgttgagaggtgaattaatctcccagtgtctggtggaaagcagacagaaaacgtttttcctctaggattttgattgtgcttagctccattccatttatttttcatcctgaaaaactccccagtgtttaatgattacaagcatacccataacatcaaattaaatcaaattgtatttgtcacacacacatggttagcagatgttaatgcgagtgtagcgaaatgcttgtacttctagttccgaccgtgcagtaatatctaacaagtaatctgacctaacaatttcacaacaactaccttatacacacaagtgtaaaggaatgattaagaatatgta

Function

NR:

description
unnamed protein product, partial

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2044998 True 642 lncRNA 0.37 1 19687765 19688406

Neighbor

gene id symbol gene type direction distance location
znf142 znf142 coding downstream 21564 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 84207 19572445 ~ 19603558 (-)
LOC110501564 mcm3ap coding downstream 117135 19544358 ~ 19570630 (-)
lss lss coding downstream 143580 19530398 ~ 19544185 (-)
LOC110501563 NA coding downstream 162266 19523061 ~ 19525499 (-)
vil1 vil1 coding upstream 55314 19743720 ~ 19763860 (-)
LOC110501577 LOC106581859 coding upstream 81002 19769408 ~ 19787525 (-)
LOC118943631 NA coding upstream 100388 19788794 ~ 19789923 (-)
agr1 LOC106581734 coding upstream 507306 20195712 ~ 20203864 (-)
hdac4 hdac4 coding upstream 691059 20379465 ~ 20660978 (-)
G1786379 NA non-coding downstream 596 19686490 ~ 19687169 (-)
G1785861 NA non-coding downstream 197032 19490519 ~ 19490733 (-)
G1785857 NA non-coding downstream 201430 19486128 ~ 19486335 (-)
G1785752 ankar non-coding downstream 367926 19319492 ~ 19319839 (-)
G1785748 NA non-coding downstream 396177 19291367 ~ 19291588 (-)
G1786566 NA non-coding upstream 285914 19974320 ~ 19974561 (-)
G1786579 NA non-coding upstream 300462 19988868 ~ 19989288 (-)
G1786646 NA non-coding upstream 393980 20082386 ~ 20082662 (-)
G1786654 LOC107662719 non-coding upstream 402275 20090681 ~ 20091112 (-)
G1786709 NA non-coding upstream 467057 20155463 ~ 20183323 (-)
G1785753 NA other downstream 365906 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 508581 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 1783814 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 2624317 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 657293 20345699 ~ 20346014 (-)
G1787166 NA other upstream 702110 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 2102350 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2729724 22418130 ~ 22419498 (-)
G1790280 NA other upstream 3476075 23164481 ~ 23169363 (-)

Expression


Co-expression Network