XLOC_037127


Basic Information

Item Value
gene id XLOC_037127
gene name NA
gene type non-coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23363848 ~ 23456345 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00075106
GCACGTCAAAGCTAAAACATTGGCCTGTCATaaacaaaaactacattttagtAGCGTTAACAGTATAACGTCTTAAACCAGTAAATGTAATTCGCTTATTAAGAGATACGCTGAAAAACAGAACTCAACAATAGCCGAAGCTGTCCTCTGCTGTCTCTGTGTGGAGCTTCATATGCTTCCATCTGCTGCCGGGAAACTTTAGCCAGCTTTTCTGCCAGCTCCCTCCAGCGACCTGCCACCTCCACGGCAGTGGTCAACAGCACAAAGTCCATGACCAGCCTAGCCACCAGACCCTGACAGTCCATCTTCAGAAGAGCCTAAACCACACATACAGTTTAAGATCAACAAGTTCTGTGCCTTGGAATGTTTGGAATGACAGGAAGTCTGCTTTAAAGGGGGAGGAACACTATGCTGATGCCCCAGAAGACCTGCTAAAGGACTGACTCCAAACAGAGCAATAAGATAACGGCGGTCCTGCATGGCTTTCCTCTTATCAGACATGCTCTACAAACAAACAGGAAGaaattctgCTTGTCTCACAGCAACAGAAAATACATGAATAAGCAGAAGGAAGATGAAATGTGTCTGCTGGATTGAAGTCAGCTAAAAATCCAGCCAGGAGGCTGTCGTTTCTGACCCGCTGTCAGATGTATGGAGTGGACCGTCCACTCGTTCAGTCTATTCCCATGAAGCCATGACAGATTCAGATAGCATTTGTAATCCATCAGTTTTATCTCCATTGTTTTGGCCCATGGGGTCAGTCTGTCTGCTTTAGTTTTACATCAGtactacacacagacacacacacacgcacacaaaacatCTTCACTGCATCTATTACTCAGACATTTCCCAAAAGAGGTCAAGAAGAACTGACATTATGAAAGTGTAAGATAAAACAGAGGGAATTATTCTGAACAACtcttttgtttaaaaatcttccttgtctattaaatatttacatatgcCTAATTctgttttacaaatattttatgtatgattatagtattattaatataactATTAATGTTGAGATCataataaatattagaaataGGAATGTTTTGTATCATTAAAAAGGTTTTACTGTAAGTGTAATGAAATTGCTGTCACAATAATGCAACCTTGCTAAATAGACc
>TCONS_00075107
CAAAGCTAAAACATTGGCCTGTCATaaacaaaaactacattttagtAGCGTTAACAGTATAACGTCTTAAACCAGTAAATGTAATTCGCTTATTAAGAGATACGCTGAAAAACAGAACTCAACAATAGCCGAAGCTGTCCTCTGCTGTCTCTGTGTGGAGCTTCATATGCTTCCATCTGCTGCCGGGAAACTTTAGCCAGCTTTTCTGCCAGCTCCCTCCAGCGACCTGCCACCTCCACGGCAGTGGTCAACAGCACAAAGTCCATGACCAGCCTAGCCACCAGACCCTGACAGTCCATCTTCAGAAGAGCCTAAACCACACATACAGTTTAAGATCAACAAGTTCTGTGCCTTGGAATGTTTGGAATGACAGGAAGTCTGCTTTAAAGGGGGAGGAACACTATGCTGATGCCCCAGAAGACCTGCTAAAGGACTGACTCCAAACAGAGCAATAAGATAACGGCGGTCCTGCATGGCTTTCCTCTTATCAGACATGCTCTACAAACAAACAGGAAGGTTTTGTATGTAGGCAGACAGCAGCTGAGCATCTCCAGTAGCGCTAAAGA
>TCONS_00075108
TGACAACTGACACCATGTAGATCTGCGCTGTTCTGACAGGATCTGCTCCATCGGCTTTATGATACCAGATCCATGGCTGAaaattctgCTTGTCTCACAGCAACAGAAAATACATGAATAAGCAGAAGGAAGATGAAATGTGTCTGCTGGATTGAAGTCAGCTAAAAATCCAGCCAGGAGGCTGTCGTTTCTGACCCGCTGTCAGATGTATGGAGTGGACCGTCCACTCGTTCAGTCTATTCCCATGAAGCCATGACAGATTCAGATAGCATTTGTAATCCATCAGTTTTATCTCCATTGTTTTGGCCCATGGGGTCAGTCTGTCTGCTTTAGTTTTACATCAGtactacacacagacacacacacacgcacacaaaacatCTTCACTGCATCTATTACTCAGACATTTCCCAAAAGAGGTCAAGAAGAACTGACATTATGAAAGTGTAAGATAAAACAGAGGGAATTATTCTGAACAACtcttttgtttaaaaatcttccttgtctattaaatatttacatatgcCTAATTctgttttacaaatattttatgtatgattatagtattattaatataactATTAATGTTGAGATCataataaatattagaaataGGAATGTTTTGTATCATTAAAAAGGTTTTACTGTAAGTGTAATGAAATTGCTGTCACAATAATGCAACCTTGCTAAATAGACc

Function

GO: NA

KEGG:

id description
ko03230 Viral genome structure
ko05164 Influenza A
ko03200 Viral proteins

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00075106 False 1139 lncRNA 0.40 4 23363848 23419530
TCONS_00075107 False 566 lncRNA 0.46 4 23363854 23456345
TCONS_00075108 True 697 lncRNA 0.36 2 23416749 23419530

Neighbor

gene id symbol gene type direction distance location
XLOC_037126 NA coding upstream 29869 23321834 ~ 23333979 (+)
XLOC_037125 tmem163a coding upstream 50506 23255410 ~ 23313342 (+)
XLOC_037124 map3k19 coding upstream 129784 23232901 ~ 23234064 (+)
XLOC_037123 map3k19 coding upstream 132645 23224761 ~ 23231203 (+)
XLOC_037121 BX936418.1 coding upstream 201464 23124252 ~ 23162384 (+)
XLOC_037129 cntnap5a coding downstream 55568 23511913 ~ 23625232 (+)
XLOC_037130 gypc coding downstream 209432 23665777 ~ 23718614 (+)
XLOC_037131 BX957274.1 coding downstream 240579 23696924 ~ 23700456 (+)
XLOC_037132 faima coding downstream 291788 23748133 ~ 23755337 (+)
XLOC_037133 si:ch211-219a4.3 coding downstream 309242 23765587 ~ 23779525 (+)
XLOC_037122 NA non-coding upstream 235617 23126156 ~ 23128231 (+)
XLOC_037119 CR394542.1 non-coding upstream 317463 23046267 ~ 23046385 (+)
XLOC_037116 NA non-coding upstream 365788 22988941 ~ 22998060 (+)
XLOC_037110 NA non-coding upstream 721163 22642386 ~ 22642685 (+)
XLOC_037136 NA non-coding downstream 428011 23884356 ~ 23887281 (+)
XLOC_037147 BX571803.2 non-coding downstream 927789 24384134 ~ 24387531 (+)
XLOC_037148 BX571803.4 non-coding downstream 967447 24423792 ~ 24427240 (+)
XLOC_037151 BX323457.3 non-coding downstream 1610316 25066661 ~ 25067730 (+)

Expression


Co-expression Network