G1786654 (LOC107662719)


Basic Information

Item Value
gene id G1786654
gene name LOC107662719
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20090681 ~ 20091112 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2045283
gttcgagagaaacagtgaacgggtaaaagagcaaagataccaatatgtccagagagtaatggaggtggaagcactggaaagaccacattcatttgtatttatcgatgaagctggatttaaccttgccaaaacacggcgcagaggaaggaatgttataggtcaaagggccactgtggaggttccaggccaaagggggggaaatatcaccatgtgtgctgcaatggccaatgatggtttgcttctcaacacaccactcattggcccatacaacacagaaaggctcatagctttcctagaacagctctatgctcagctagtgccagcagaacaggg

Function

NR:

description
PREDICTED: insertion element IS630 uncharacterized 39 kDa protein-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2045283 True 333 lncRNA 0.47 2 20090681 20091112

Neighbor

gene id symbol gene type direction distance location
LOC118943631 NA coding downstream 300758 19788794 ~ 19789923 (-)
LOC110501577 LOC106581859 coding downstream 303156 19769408 ~ 19787525 (-)
vil1 vil1 coding downstream 326821 19743720 ~ 19763860 (-)
znf142 znf142 coding downstream 424480 19655763 ~ 19666201 (-)
LOC110501567 usp37 coding downstream 487123 19572445 ~ 19603558 (-)
agr1 LOC106581734 coding upstream 104600 20195712 ~ 20203864 (-)
hdac4 hdac4 coding upstream 288353 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 599404 20690516 ~ 20692314 (-)
LOC110501586 LOC106581869 coding upstream 639798 20730910 ~ 20739954 (-)
LOC100136257 LOC100136257 coding upstream 674800 20765912 ~ 20777157 (-)
G1786646 NA non-coding downstream 8019 20082386 ~ 20082662 (-)
G1786579 NA non-coding downstream 101393 19988868 ~ 19989288 (-)
G1786566 NA non-coding downstream 116120 19974320 ~ 19974561 (-)
G1786380 NA non-coding downstream 402275 19687765 ~ 19688406 (-)
G1786379 NA non-coding downstream 403512 19686490 ~ 19687169 (-)
G1786709 NA non-coding upstream 64351 20155463 ~ 20183323 (-)
G1786720 NA non-coding upstream 80727 20171839 ~ 20175644 (-)
G1786733 NA non-coding upstream 99410 20190522 ~ 20190787 (-)
G1786737 NA non-coding upstream 101930 20193042 ~ 20193459 (-)
G1786751 NA non-coding upstream 129094 20220206 ~ 20221073 (-)
G1785753 NA other downstream 768822 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 911497 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 2186730 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 3027233 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 254587 20345699 ~ 20346014 (-)
G1787166 NA other upstream 299404 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 1699644 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2327018 22418130 ~ 22419498 (-)
G1790280 NA other upstream 3073369 23164481 ~ 23169363 (-)

Expression


Co-expression Network