G1786788


Basic Information

Item Value
gene id G1786788
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20281159 ~ 20281832 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2045427
GAAGGTATGCAAATAAGTCAAGAAGCAACTCATACCGACTCATACAGAGAATGGAGGCTTTGTCACAGCAAACAAGCAATAAACAACGTTTCTGATgcactgtacactgagtgtacaaaacattaggaacaccttcctaatattgagttgcacccccttttgccctcagagtAGCCTCAATTCGtgagggcatggactctacatggtgtcgaaagcattccacagggatgctggaccatgttgattccaatgcttcccacagttgtgtcaagttggctgggtgtcctttgggtgtttcccatgtgtattcttgatacacatgggaaactgttgagcgagtaaaacccagcagcgttgcagttcttgatacactcagaccggtgcgcctggcatcaACTACATTACCATACCCCCCAAAGACACTtccatcttttgtcttgcccattcacaatCCATGTCCCAAGGtgtaaaagtattttttttaacccatctcctgcccttcatctacactgtttgaagtggatttaaaaaatGACATCAATATagggtcatagctttcacctggattcacctggtcagcctatCTC
>TU2045428
TGCAGATCACTTTGTAGGTGGTACAGAAAGCCCTAATACagagaaaatagaaaataaatatgtttttggaATTATTGCAATTATGTGGAAGGTATGCAAATAAGTCAAGAAGCAACTCATACCGACTCATACAGAGAATGGAGGCTTTGTCACAGCAAACAAGCAATAAACAACGTTTCTGATgcactgtacactgagtgtacaaaacattaggaacaccttcctaatattgagttgcacccccttttgccctcagagtAGCCTCAATTCGtgagggcatggactctacatggtgtcgaaagcattccacagggatgctggaccatgttgattccaatgcttcccacagttgtgtcaagttggctgggtgtcctttgggtgtttcccatgtgtattcttgatacacatgggaaactgttgagcgagtaaaacccagcagcgttgcagttcttgatacactcagaccggtgcgcctggcatcaACTACATTACCATACCCCCCAAAGACACTtccatcttttgtcttgcccattcacaatCCATGTCCCAAGGtgtaaaagtattttttttaacccatctcctgcccttcatctacactgtttgaagtggatttaaaaaatGACATCAATATagggtcatagctttcacctggattcacctggtcagcctatCTC

Function

NR:

description
unnamed protein product

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2045427 False 587 lncRNA 0.45 1 20281159 20281745
TU2045428 True 674 lncRNA 0.43 1 20281159 20281832

Neighbor

gene id symbol gene type direction distance location
agr1 LOC106581734 coding downstream 77295 20195712 ~ 20203864 (-)
LOC118943631 NA coding downstream 491236 19788794 ~ 19789923 (-)
LOC110501577 LOC106581859 coding downstream 493634 19769408 ~ 19787525 (-)
vil1 vil1 coding downstream 517299 19743720 ~ 19763860 (-)
znf142 znf142 coding downstream 614958 19655763 ~ 19666201 (-)
hdac4 hdac4 coding upstream 97633 20379465 ~ 20660978 (-)
LOC118943627 NA coding upstream 408684 20690516 ~ 20692314 (-)
LOC110501586 LOC106581869 coding upstream 449078 20730910 ~ 20739954 (-)
LOC100136257 LOC100136257 coding upstream 484080 20765912 ~ 20777157 (-)
LOC110501587 LOC106586113 coding upstream 861252 21143084 ~ 21447203 (-)
G1786781 NA non-coding downstream 13395 20267562 ~ 20267764 (-)
G1786777 NA non-coding downstream 15926 20264647 ~ 20265233 (-)
G1786751 NA non-coding downstream 60086 20220206 ~ 20221073 (-)
G1786737 NA non-coding downstream 87700 20193042 ~ 20193459 (-)
G1786733 NA non-coding downstream 90372 20190522 ~ 20190787 (-)
G1786789 NA non-coding upstream 1281 20283113 ~ 20283322 (-)
G1786790 NA non-coding upstream 2763 20284595 ~ 20284840 (-)
G1786792 NA non-coding upstream 5034 20286866 ~ 20287069 (-)
G1786793 NA non-coding upstream 5361 20287193 ~ 20287547 (-)
G1786804 NA non-coding upstream 20330 20302162 ~ 20302583 (-)
G1785753 NA other downstream 959300 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 1101975 19175567 ~ 19179266 (-)
G1783895 LOC106581829 other downstream 2377208 17869529 ~ 17903951 (-)
LOC110501514 dapl1 other downstream 3217711 17057104 ~ 17063550 (-)
G1786832 LOC100136012 other upstream 63867 20345699 ~ 20346014 (-)
G1787166 NA other upstream 108684 20390516 ~ 20455983 (-)
LOC110501594 LOC106581696 other upstream 1508924 21788428 ~ 21913721 (-)
G1789581 NA other upstream 2136298 22418130 ~ 22419498 (-)
G1790280 NA other upstream 2882649 23164481 ~ 23169363 (-)

Expression


Co-expression Network