G1786331


Basic Information

Item Value
gene id G1786331
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20287725 ~ 20288393 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2044942
agtaaCTTTCTGTTCTTATTGTGAGCAAAAACAGCTGCAAGTTGTTAGTTCCACACAATCTTTTTGTCTACCTCTTTATCGAGACTCCTTTTTACTTGCAGTTACACTGGCATTTTCCCCTGTCTGTAATTGCCATGCACCTTTGTTTGTATGATCTCATACCTAAGACTTTCCAGCACTCTTACTTTCCTCAAACGAACACACTGCTTTCTGCTGTGTTTATTTCACATCACACGAACAACAGACAAGTGCATGTTTCCAATACTTGACATTTAGATCCAAGAAAAGTCAAGCTGTATACATTAAAAGCCAGGAGGCCAACTTGATTCACTCACACGAACAGAAGACTGTCACGAAATCAAATATGAATGATTTATGGTCCAAGAGAAACAGTGTTTTCTGTTTGTAGCCGTGTCAGGTCAATTAAACAGGAAGGACAGGGTGTGGTGAGTGAATGTTGGATCATATTTTATTGACGTTTCGTAATGTAAGCCCTACATGTGAAATACAGTACGTTAGTATGTCCCCGAGTGCTTTTCCTCTATCTACTgccacacacacgacacacacaggTTTCACACACAAATTCCAGTCTAATTTGTCTGGTGTGAAAAGAGAGGAAAGTCTCTAGAGCTTTATTAAAATCATTACGCAAGTTATGTGGCCCGG
>TU2044943
TGCACCTTTGTTTGTATGATCTCATACCTAAGACTTTCCAGCACTCTTACTTTCCTCAAACGAACACACTGCTTTCTGCTGTGTTTATTTCACATCACACGAACAACAGACAAGTGCATGTTTCCAATACTTGACATTTAGATCCAAGAAAAGTCAAGCTGTATACATTAAAAGCCAGGAGGCCAACTTGATTCACTCACACGAACAGAAGACTGTCACGAAATCAAATATGAATGATTTATGGTCCAAGAGAAACAGTGTTTTCTGTTTGTAGCCGTGTCAGGTCAATTAAACAGGAAGGACAGGGTGTGGTGAGTGAATGTTGGATCATATTTTATTGACGTTTCGTAATGTAAGCCCTACATGTGAAATACAGTACGTTAGTATGTCCCCGAGTGCTTTTCCTCTATCTACTgccacacacacgacacacacaggTTTCACACACAAATTCCAGTCTAATTTGTCTGGTGTGAAAAGAGAGGAAAGTCTCTAGAGCTTTATTAAAATCATTACGCAAGTTATGTGGCCCGG

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2044942 False 669 lncRNA 0.40 1 20287725 20288393
TU2044943 True 534 lncRNA 0.40 1 20287860 20288393

Neighbor

gene id symbol gene type direction distance location
asb1 asb1 coding upstream 5873 20269646 ~ 20281952 (+)
traf3ip1 traf3ip1 coding upstream 28452 20206402 ~ 20259273 (+)
adarb1b LOC106581860 coding upstream 112065 19997839 ~ 20175660 (+)
LOC110502116 NA coding upstream 415028 19872147 ~ 19872697 (+)
zgc:66484 LOC106581857 coding upstream 543776 19734287 ~ 19743949 (+)
LOC110502064 LOC106581735 coding downstream 49735 20338128 ~ 20343956 (+)
twist2 twist2 coding downstream 71247 20359640 ~ 20365532 (+)
LOC110502066 NA coding downstream 655531 20943924 ~ 20945171 (+)
LOC110501589 LOC106581698 coding downstream 1340151 21628544 ~ 21667403 (+)
LOC110501590 LOC106581697 coding downstream 1381123 21669516 ~ 21701293 (+)
G1786329 NA non-coding upstream 5305 20282198 ~ 20282420 (+)
G1786321 NA non-coding upstream 22612 20264499 ~ 20265113 (+)
G1786282 NA non-coding upstream 99924 20187583 ~ 20187801 (+)
G1786280 NA non-coding upstream 103559 20183899 ~ 20184166 (+)
G1786343 NA non-coding downstream 29086 20317479 ~ 20318069 (+)
G1786354 NA non-coding downstream 56407 20344800 ~ 20345227 (+)
G1786870 NA non-coding downstream 101058 20389451 ~ 20456014 (+)
G1786866 NA non-coding downstream 110807 20399200 ~ 20401362 (+)
G1787075 NA non-coding downstream 388938 20677331 ~ 20677534 (+)
G1786330 NA other upstream 3154 20283181 ~ 20284571 (+)
G1785947 znf142 other upstream 625799 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 659965 19603742 ~ 19627954 (+)
ybey ybey other upstream 715286 19570580 ~ 19572946 (+)
G1787719 NA other downstream 845872 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 1706971 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 1710080 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 3127700 23416093 ~ 23432383 (+)
G1790805 NA other downstream 3830169 24118562 ~ 24119475 (+)

Expression


Co-expression Network