Gene
RNA
| Item | Value |
|---|---|
| gene id | G1786814 |
| gene name | NA |
| gene type | non-coding |
| species | rainbow trout (Oncorhynchus mykiss) |
| category of species | economic fish |
| Item | Value |
|---|---|
| chromosome id | NC_048586.1 |
| NCBI id | CM023240.2 |
| chromosome length | 52474311 |
| location | 20324200 ~ 20324491 (-) |
| genome version | USDA_OmykA_1.1_2020_rainbow_trout_Genome |
| description |
|---|
| PREDICTED: RNA-directed DNA polymerase from mobile element jockey-like isoform X1 |
| RNA id | representative | length | rna type | GC content | exon number | start site | end site |
|---|---|---|---|---|---|---|---|
| TU2045455 | True | 292 | lncRNA | 0.44 | 1 | 20324200 | 20324491 |
| gene id | symbol | gene type | direction | distance | location |
|---|---|---|---|---|---|
| agr1 | LOC106581734 | coding | downstream | 120336 | 20195712 ~ 20203864 (-) |
| LOC118943631 | NA | coding | downstream | 534277 | 19788794 ~ 19789923 (-) |
| LOC110501577 | LOC106581859 | coding | downstream | 536675 | 19769408 ~ 19787525 (-) |
| vil1 | vil1 | coding | downstream | 560340 | 19743720 ~ 19763860 (-) |
| znf142 | znf142 | coding | downstream | 657999 | 19655763 ~ 19666201 (-) |
| hdac4 | hdac4 | coding | upstream | 54974 | 20379465 ~ 20660978 (-) |
| LOC118943627 | NA | coding | upstream | 366025 | 20690516 ~ 20692314 (-) |
| LOC110501586 | LOC106581869 | coding | upstream | 406419 | 20730910 ~ 20739954 (-) |
| LOC100136257 | LOC100136257 | coding | upstream | 441421 | 20765912 ~ 20777157 (-) |
| LOC110501587 | LOC106586113 | coding | upstream | 818593 | 21143084 ~ 21447203 (-) |
| G1786804 | NA | non-coding | downstream | 21617 | 20302162 ~ 20302583 (-) |
| G1786793 | NA | non-coding | downstream | 36653 | 20287193 ~ 20287547 (-) |
| G1786792 | NA | non-coding | downstream | 37131 | 20286866 ~ 20287069 (-) |
| G1786790 | NA | non-coding | downstream | 39360 | 20284595 ~ 20284840 (-) |
| G1786789 | NA | non-coding | downstream | 40878 | 20283113 ~ 20283322 (-) |
| G1786815 | NA | non-coding | upstream | 221 | 20324712 ~ 20324935 (-) |
| G1786834 | NA | non-coding | upstream | 21655 | 20346146 ~ 20346632 (-) |
| G1786846 | NA | non-coding | upstream | 29256 | 20353747 ~ 20354077 (-) |
| G1787208 | NA | non-coding | upstream | 74361 | 20398852 ~ 20400113 (-) |
| G1787259 | NA | non-coding | upstream | 200282 | 20524773 ~ 20532999 (-) |
| G1785753 | NA | other | downstream | 1002341 | 19321188 ~ 19321859 (-) |
| LOC110501547 | LOC106586143 | other | downstream | 1145016 | 19175567 ~ 19179266 (-) |
| G1783895 | LOC106581829 | other | downstream | 2420249 | 17869529 ~ 17903951 (-) |
| LOC110501514 | dapl1 | other | downstream | 3260752 | 17057104 ~ 17063550 (-) |
| G1786832 | LOC100136012 | other | upstream | 21208 | 20345699 ~ 20346014 (-) |
| G1787166 | NA | other | upstream | 66025 | 20390516 ~ 20455983 (-) |
| LOC110501594 | LOC106581696 | other | upstream | 1466265 | 21788428 ~ 21913721 (-) |
| G1789581 | NA | other | upstream | 2093639 | 22418130 ~ 22419498 (-) |
| G1790280 | NA | other | upstream | 2839990 | 23164481 ~ 23169363 (-) |
