G1787128 (LOC106581870)


Basic Information

Item Value
gene id G1787128
gene name LOC106581870
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 20765912 ~ 20773791 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2045790
GGGTGTATAAACGTTTTAATTAGCCAGTAAAGTAGAAGGATGAAAATCATGGAAATACATTTAGCAATGTACAGTTCTGTATAATTAAATCAAAGACAGTCCAAGGTAAAATCCACATCTGCTGTGAGTAAAGGACTGCAGGGGCTGTCTCAACAGTTACTAGCCCAGAGAGCCCTGTCACTAGATACAAAATACCTGTCCAGAAAGACAGGTGGAGGCATTGAAGCGGAAATTGGGCCTCCGACAGGTAGCAAGAGACTGTTCTAACACATACAATTAGGGAGCGAGACATGACGCCCATTACAGGGTCTCTAGATAAGATAGAGATTGAGAGGGGAGTGCGTCCAGGccaggaagccattttgtagTGGCCCCCCAAGGACCGCAGGTCAGCGTGAGAATTGCCTCTTGTCCCCCTTGCCTTTGTTGACGTGCTTGAAGATTTTGGCTTTGTGAGCGGGCTTGCCCTTCTGGTAGCCGAAGCCGCCACCTCCACCCCTCTTCGTCATCTTCAGTCCTCCTTTGCTGTGAACGTTGAGGTCGACGTAGGGAGGCACAGTAAAGCCGAAAGACTGTGCCACCATGGGGAGGTTGAGCGTGTTGACACTGTAGATCGCTTTGAGGGAATGAGAGTCGTACGCCCGCACATAGGACTTGTAGGCCTCCTGGGCTGACTTGTGCAGGTAGTAGTTCTTCTCAATCAGCTTATTCAGCTGACCCTGGATATCAGAGATCTTTGCCCAAGAGAATTCAAACTCACTCAAAGGAACCTTGGCTTGTTTGAGGAAGCGCAGGAAACCCAGCTCCTCTGGCCTGAGGATTAGGAGGGCATGGCCTATGCCGTTGATCCCGCGAGCCGTTCTGCCCACCCTGTGGATATATTCCTTGGGGTCATCTGGGGGGTCATATTGGACAATCCAGTCCACCTCAGGGATGTCCAGGCCTCTGGCCGCCACATCTGTACACAGCAGGATGCCTGAGTCGGCGTTACAGAACTGGAAGAAGGTGGTGGTACGCTTGGTCTGCTTTTGCTTCCCGTGGATGGCCATGACAGGCAGGTCAATGTAGTTGAGCAGCTCGTAGTGGAACTTGACCGACATGCAGGAGGAGAAGAACACCATCAGCTTCTTCTTGCGGTTCTTCTTCAGGAAGGTGAAGAGCAGCATGAAGCGCTTCTCTGAGGGACACACCACATAGCCCTGCTCCAGGCCGTCCACGGTTGCATTGTCCTTGTTGTCGTCCACACCCACGTAGAGGGGCTCCTTCTTCAGGGAAATACGGGCCAGGTCCTCCACCTTACGGGTCTGGGTGGCCGAGAACAGCATCGTCTGCCTCCGCTTTGGCAGGAGTTTGATGATCTGCTTCAGCTCCTCCTCGAAGCCGACCTCCAGGATACGGTCAGCTTCGTCAATAATCAGACACTGGAGGTTCTTATACATGAAGCCAGCAGTATTCTGGAGGTGGTCAAGCAGTCTCCCGGGCGTGGCCACCAGGATGTTGACGCCATTGGCCAGCCTCTGGGCCTCGGCCGTGCGGTTGCTGCCGCCCATGATCAGGCCGAAGGTGTGCACGTGGTGGGTCATCAGCTCCTTCATCACGCCGTACGTCTGCATGGCCAACTCGCGCGTTGGGGACAAGATCACCACGCCTGTACCTTAGGATAGTGGGGAGCAGGGCTGCGTCTCAGGCACATTTCAGTTCAGTTCCTAGGCCCTTTCTTTAGATCCTACACCTTTGATGCTAGTAAGACTGGATGGGTGAAAGGTAATGAGGGACATTGTGCCTAGTCTACAGGAGAGTTAAGTCAAAACATTGCCATATTTCTTACTCCTACCCAGTCCTTTC
>TU2045791
GGGTGTATAAACGTTTTAATTAGCCAGTAAAGTAGAAGGATGAAAATCATGGAAATACATTTAGCAATGTACAGTTCTGTATAATTAAATCAAAGACAGTCCAAGGTAAAATCCACATCTGCTGTGAGTAAAGGACTGCAGGGGCTGTCTCAACAGTTACTAGCCCAGAGAGCCCTGTCACTAGATACAAAATACCTGTCCAGAAAGACAGGTGGAGGCATTGAAGCGGAAATTGGGCCTCCGACAGGTAGCAAGAGACTGTTCTAACACATACAATTAGGGAGCGAGACATGACGCCCATTACAGGGTCTCTAGATAAGATAGAGATTGAGAGGGGAGTGCGTCCAGGccaggaagccattttgtagTGGCCCCCCAAGGACCGCAGGTCAGCGTGAGAATTGCCTCTTGTCCCCCTTGCCTTTGTTGACGTGCTTGAAGATTTTGGCTTTGTGAGCGGGCTTGCCCTTCTGGTAGCCGAAGCCGCCACCTCCACCCCTCTTCGTCATCTTCAGTCCTCCTTTGCTGTGAACGTTGAGGTCGACGTAGGGAGGCACAGTAAAGCCGAAAGACTGTGCCACCATGGGGAGGTTGAGCGTGTTGACACTGTAGATCGCTTTGAGGGAATGAGAGTCGTACGCCCGCACATAGGACTTGTAGGCCTCCTGGGCTGACTTGTGCAGGTAGTAGTTCTTCTCAATCAGCTTATTCAGCTGACCCTGGATATCAGAGATCTTTGCCCAAGAGAATTCAAACTCACTCAAAGGAACCTTGGCTTGTTTGAGGAAGCGCAGGAAACCCAGCTCCTCTGGCCTGAGGATTAGGAGGGCATGGCCTATGCCGTTGATCCCGCGAGCCGTTCTGCCCACCCTGTGGATATATTCCTTGGGGTCATCTGGGGGGTCATATTGGACAATCCAGTCCACCTCAGGGATGTCCAGGCCTCTGGCCGCCACATCTGTACACAGCAGGATGCCTGAGTCGGCGTTACAGAACTGGAAGAAGGTGGTGGTACGCTTGGTCTGCTTTTGCTTCCCCTGAGAGATCAAAGCAAAAGGAGATTAGACGTCAGCCACAGACAGCAGTGACCACAGAGGATGCCTGCTGAAGGCTTCCGCATGCTTCGGTTCGGTTGACTAGGCATACTGAACGTGCATGTTagcatactcccttaaaaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2045790 False 1845 lncRNA 0.53 9 20765912 20773791
TU2045791 True 1180 lncRNA 0.51 5 20765912 20769522

Neighbor

gene id symbol gene type direction distance location
twist2 twist2 coding upstream 400380 20359640 ~ 20365532 (+)
LOC110502064 LOC106581735 coding upstream 421956 20338128 ~ 20343956 (+)
asb1 asb1 coding upstream 484060 20269646 ~ 20281952 (+)
traf3ip1 traf3ip1 coding upstream 506639 20206402 ~ 20259273 (+)
adarb1b LOC106581860 coding upstream 590252 19997839 ~ 20175660 (+)
LOC110502066 NA coding downstream 170133 20943924 ~ 20945171 (+)
LOC110501589 LOC106581698 coding downstream 854753 21628544 ~ 21667403 (+)
LOC110501590 LOC106581697 coding downstream 895725 21669516 ~ 21701293 (+)
c22h2orf69 cssa21h2orf69 coding downstream 1155571 21929362 ~ 21934705 (+)
esyt3 LOC106581688 coding downstream 1261581 22035372 ~ 22076238 (+)
G1787121 NA non-coding upstream 8231 20755572 ~ 20757681 (+)
G1787114 NA non-coding upstream 18999 20746514 ~ 20746913 (+)
G1787081 NA non-coding upstream 82384 20683313 ~ 20683528 (+)
G1787075 NA non-coding upstream 88378 20677331 ~ 20677534 (+)
G1786870 NA non-coding upstream 309898 20389451 ~ 20456014 (+)
G1787486 NA non-coding downstream 194655 20968446 ~ 20988849 (+)
G1787608 NA non-coding downstream 224975 20998766 ~ 20999045 (+)
G1787618 NA non-coding downstream 232413 21006204 ~ 21006445 (+)
G1787720 NA non-coding downstream 363140 21136931 ~ 21137259 (+)
G1787721 NA non-coding downstream 363664 21137455 ~ 21137953 (+)
G1786330 NA other upstream 481341 20283181 ~ 20284571 (+)
G1785947 znf142 other upstream 1103986 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 1138152 19603742 ~ 19627954 (+)
ybey ybey other upstream 1193473 19570580 ~ 19572946 (+)
G1787719 NA other downstream 360474 21134265 ~ 21136477 (+)
G1788811 LOC106581691 other downstream 1221573 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 1224682 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 2642302 23416093 ~ 23432383 (+)
G1790805 NA other downstream 3344771 24118562 ~ 24119475 (+)

Expression


Co-expression Network