G1788013


Basic Information

Item Value
gene id G1788013
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21138329 ~ 21139127 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2046736
AATGTGAATGGGATCAAATTTGGTTTATATTCAGACTTGGGCTGACTACTTTTTCAATCCCAAAATTATCAACTGGAATTACTCAATAAACACAATCGCTGACATAGACTGTGAATACATTTTCAATTAGGACTACAGTTGCATAGGGCAGGACTACACATTGGAAACCTGCGTAAAGAAAGCTCAGCACTGTGAGTTTTATGGTCCAATCATGTtgctttctctgtgtctgtgtatagGAAACCTCCATAGTCcttcttaaatatatatatatatgtactgcAGGTTTCTGTagtttgacagggttttcatCCTCCCCAAGGCCAGGACTTTTTCCAGGACTTATGACCATATAACCCGATTAGAAAAACTCTGCTCCCATCATAACCCATACAACAGACTAATCCCGTCATACCGTATAAGGTCCGGAGTATTACCTGGTTAGGTTACCAGATCAGGAATAACTAAGGACCCTagatattttttttctcacatcACTCTGGGACCTGTGATGCCACCTCTGGCATAAAAAGATCTCGGAGTGAATTACATTTAGCAGCACATGCAGTGATGTTCAGTGCTTTGTGGTGTCTGATTGACGTATTTTGTGGAATGTTGTGGCACTTCATAGTAGTTTGAAGTATTTTTCAGTTGATCAGTTGATGTTTTTCCCAAGAATGGTGTTTCTCTACTGTATAGTTGTCACGGACCCCTCCGGAAatgtcattacacacacctggtccccattcccattgattagtaattgtataagtgtgccctttttTCACCACTGTCCTgt

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2046736 True 799 lncRNA 0.40 1 21138329 21139127

Neighbor

gene id symbol gene type direction distance location
LOC100136257 LOC100136257 coding downstream 361172 20765912 ~ 20777157 (-)
LOC110501586 LOC106581869 coding downstream 398375 20730910 ~ 20739954 (-)
LOC118943627 NA coding downstream 446015 20690516 ~ 20692314 (-)
hdac4 hdac4 coding downstream 477351 20379465 ~ 20660978 (-)
agr1 LOC106581734 coding downstream 934465 20195712 ~ 20203864 (-)
LOC110501587 LOC106586113 coding upstream 3957 21143084 ~ 21447203 (-)
LOC110501588 LOC106581699 coding upstream 433437 21572564 ~ 21590999 (-)
LOC110501591 LOC106581664 coding upstream 569754 21708881 ~ 21766231 (-)
LOC110501594 LOC106581696 coding upstream 649301 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 783673 21922800 ~ 21936414 (-)
G1788010 NA non-coding downstream 1580 21136543 ~ 21136749 (-)
G1787982 NA non-coding downstream 15971 21098313 ~ 21122358 (-)
G1787259 NA non-coding downstream 605330 20524773 ~ 20532999 (-)
G1787208 NA non-coding downstream 738216 20398852 ~ 20400113 (-)
G1786846 NA non-coding downstream 784252 20353747 ~ 20354077 (-)
G1788014 NA non-coding upstream 1931 21141058 ~ 21141545 (-)
G1788199 NA non-coding upstream 251085 21390212 ~ 21395471 (-)
G1788252 NA non-coding upstream 314287 21453414 ~ 21453619 (-)
G1788266 NA non-coding upstream 337397 21476524 ~ 21476740 (-)
G1788277 NA non-coding upstream 349994 21489121 ~ 21489349 (-)
G1787166 NA other downstream 682346 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 792315 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 1479229 19655763 ~ 19666201 (-)
G1785753 NA other downstream 1816470 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 1959145 19175567 ~ 19179266 (-)
G1789581 NA other upstream 1279003 22418130 ~ 22419498 (-)
G1790280 NA other upstream 2025354 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 2293867 23368423 ~ 23460589 (-)
G1791405 NA other upstream 3187602 24326729 ~ 24327127 (-)

Expression


Co-expression Network