G1788570


Basic Information

Item Value
gene id G1788570
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21664850 ~ 21668426 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047323
AATAGTAAATGATATGGCAAAAATAAGTATCTTCATTTAGGGAGAAGGTGGGGATACCAGAACAAAAATCACTATTAAGACATCATTCTTACAAAAAAAATAGCACTGGAGTCATGCCTACATTGAAAAGACAATTATGGCAGAGACAAGAATGAAAATACATCTTCACATAGTTTTAATAGTGCAGCATAACATTGAAAAGGGACTTACGGAACAACAAAGACAAAAGAAAGATTCACCTTCacccatttattattattatttttttttttacattgtttttgtGCATGATCCCAATAATAAatagaacatcactcagagatgcacaaaaacgatataacattcaaaatgggtgaatcttCCCATCAAAAGAGCTTGTGATACAGTAAACTATGATAATCACACTTTTATAAATCAGCATACATCTTAAAAAGAGATCCATTAATAAAGGAAGGGACATTATCAAAACAAAATCTGATTGGACAAAGGAAAATAAAGTAAAAGtacctgagaaaaaaaaaaaaaaactttatacGATATATGCATTCCGTAAGCACCATTGATTGTTTTTTTGAATTtttgaaaacacacacattttaaaaacATGAGTTTTGAAAAAATTACAAACAATGCACTTATGTATCTGGCACCCTGCCCATCGATAAGAAACTCCATAAATGGATGATATGATCATTTGTTTCATATCTACATTTTAGCTTACCAATTATCATAGGATGTACAGTTTCAGAGTTCCTGTTTTTGCAAATATAAATAGACTACAGGAACCCCATGAATTAAACAACCAAATACATCTCACAGCTGATTTCCTTTGTGCATTAATCACAGCTGATGTTGACAAAAGCTATTGGCtaaggtataaaaaaaatgttttgacaaTGTGAAAGTAAAAACTGAGTTAGACAAAGTTAAAGATGGCTCAAGGGgctgaactttttttttttttacagttttacagGGCAAGTAATTACTTCCTGCAATTATCGCCAGTCATAAAATGTGTCCTATCCACACCGAGCACTGGGAAAACACTCCATAAAGTTCTGTACACAGGTTGACAGTTGATGGAAAAATATTGATAACATGCTCGTCGTCATGGTGTACATCAAGGGTTACagagacaaaaaaacaaaaaatatatgctTTTACTCATCAAATTAAATCAGCAGCAGAATAAGAGTGAGTGGGTGATTGATTTGCATTGTAGGTGCTGATCAAACAAAATGTGTCTAAAATACAATTGTTGGACATACAAACATTATCATGGCATAAATTTTACCATTAAACATAATTGTTGAAATAATCAAATCAGATAAAGTCTCCATTCATGGCTCCTAATGCCCACAGAGGAGTGGTAGAAATGATAAAAACAGATAAATTATTAGGTTATTCGATTATTAGGTAATGGTCTCTATTAAGACCAAGGGAACTTAATTGGATGGTAAATAGTGCTTTTGTTAAACATACTGCAAAATCTATTTACTTGGTCTGTCTTAAATCCATGCCACCTTTTTTAGTGTCATAACATAGTTAAgatttacaaaaacaagtagtgtaAAACATCTGAGAACATCTAAGCTATTATTTGTATAGAAGGGTCATTATGTGAAATACAAACTAAAGTAACAATTTATTTGCATTTCATGGCGTAGTACAGTATTTACACCTGTTTGGAGATGGCATCTGTTTTCTGTTGAAAAGGCAGCAGCATTATAACTTTTGTATTGCAGCTTAGTTTAGTTGAGGGGTTAGTCTTAGTTCACATTAGAACGCATACAAACGTCTTCATCACAGATTTCCTTCATGATCCAGCATTGCCTGGCTGCCAGGGGCCAGAGATAGAGGGATGTAGAGTATGGGGGAGAAATCAAAGGCGGTAGTCAACAGCTGTGCTCAGCTCTCTTCTAATCTCAAACTTCAGATACTGCTTGTTCACAGTGATTCTGAGTAGGCACTGCACAAATGGGcctgtattaaaaataaaaaaaaaagtgtcctaCAATAGCATTGCTGATATAGTGCAGGTCCTCTGTGTCCATATAATCATagtcattatgatctaaaaggctaaacaaATCCTATATCAATACTCCTAGTCCGAGACCATTTATGAATATGGACAGATCTGTAAATCGGATTCGTAAATCAACTAAACAGTCTGATAATGAAGTACATGACCAACTTTTTCCACCCATACTATTTCTAGATTAACAGGTCTGAATTGTGCTTGCTCCAAACCCACACCTGTGAACAAGCAGTGAGGCTATAGACAACCAACAAGAGGATACATCTACATTAGCCAATCAGAGCACTTTTCCCCTCACAACAAAAACAATACCTTTGCTTTTCTCCTTATGGTCTGACTGAAGCCTCTGTCTCATTATTTAAACTTGTACCATTTCAAGAGGCCACATGACAGTATGAGCCATTGATAAAAGCCTGGCACTTTCAGTACCATAAAGTCCTTCTTTTTACACAACGAAATCCGACATAACAAAACACACACGTCGTCGTCAGTTGACGACGAGTCGCGTCAACGTTGTACAAAGGAAAAAGAGTTCATCTTGTAGAGATGGATCGGTCATCTCCACACTGCAGAGAATATATAGGTTGAATGAGAGGCACTGGGGGTAAGGTCTCTGTTTGGTCGTTTTGAGA
>TU2047325
cAACTTtcaacattattttttatttaactaggcaagtcagttaagaacaaattcttatttacaatgacggcctaggaacagtgggttaactgccttgttcagggattCGTTCTAGCAACCTTCCTGCCACCCCAAATTACAACCACAATTTCTTAATTCAGTCAAAACATATGCAGCTCTCATTCAACACATCTAATACTAGTCCCTGGCAGCAACAAGGAATCAAAATGCAAGGAGTTCTGCAGGCTATTCCAAGATGAGTCGTCTTCCTCATGGAGGGAATGATGACGCAATCATTGTGAGACAGAGGGAATGTTGGTCCTCAACTCATGGCTCAGATTCTTCTTTCAGGGTAAATGGGGggttagccctgagttagcctgccgcggagcaggttagttctgaaggattcgttGCCATATAAAAATGTCTAAAAGGTAAACTACTTTCGTGTCACCAGCTATCCCGAGTTAGTCAGTTGACCAAAGTTAGCTCGCTATGACTCTTCTATCTTGTGTACAACACTCGTCCTGAGTTGAGCCTTGGGTCTTTTGTAGGCCGCCCTGTGTCCAATAACAGATACAGAACACCTCACACACAAAATTGAAAAGTGTGaactaacacacacaacacaaaactgTGGCTAACAAATCCTAAGCAACCTACCATGTAGTGAGTACATGTTGTTTGAAGCACAGTAGACCAATATAACTACAGTAATTTAGCAGGTGTCAAAGCTGCTGGAAAACCTTCCTAGTGCATATGTGAATTTCAGGATGTGATGCTCATTTGAATTTCTTAGCTTTTCCAGCTTTTGACCAGTCAACATTTTTTGTGATTTTATTTAAATAGGTTTACATTTTAAGATCACAATAGTAAATGATATGGCAAAAATAAGTATCTTCATTTAGGGAGAAGGTGGGGATACCAGAACAAAAATCACTATTAAGACATCATTCTTACAAAAAAAATAGCACTGGAGTCATGCCTACATTGAAAAGACAATTATGGCAGAGACAAGAATGAAAATACATCTTCACATAGTTTTAATAGTGCAGCATAACATTGAAAAGGGACTTACGGAACAACAAAGACAAAAGAAAGATTCACCTTCacccatttattattattatttttttttttacattgtttttgtGCATGATCCCAATAATAAatagaacatcactcagagatgcacaaaaacgatataacattcaaaatgggtgaatcttCCCATCAAAAGAGCTTGTGATACAGTAAACTATGATAATCACACTTTTATAAATCAGCATACATCTTAAAAAGAGATCCATTAATAAAGGAAGGGACATTATCAAAACAAAATCTGATTGGACAAAGGAAAATAAAGTAAAAGtacctgagaaaaaaaaaaaaaaactttatacGATATATGCATTCCGTAAGCACCATTGATTGTTTTTTTGAATTtttgaaaacacacacattttaaaaacATGAGTTTTGAAAAAATTACAAACAATGCACTTATGTATCTGGCACCCTGCCCATCGATAAGAAACTCCATAAATGGATGATATGATCATTTGTTTCATATCTACATTTTAGCTTACCAATTATCATAGGATGTACAGTTTCAGAGTTCCTGTTTTTGCAAATATAAATAGACTACAGGAACCCCATGAATTAAACAACCAAATACATCTCACAGCTGATTTCCTTTGTGCATTAATCACAGCTGATGTTGACAAAAGCTATTGGCtaaggtataaaaaaaatgttttgacaaTGTGAAAGTAAAAACTGAGTTAGACAAAGTTAAAGATGGCTCAAGGGgctgaactttttttttttttacagttttacagGGCAAGTAATTACTTCCTGCAATTATCGCCAGTCATAAAATGTGTCCTATCCACACCGAGCACTGGGAAAACACTCCATAAAGTTCTGTACACAGGTTGACAGTTGATGGAAAAATATTGATAACATGCTCGTCGTCATGGTGTACATCAAGGGTTACagagacaaaaaaacaaaaaatatatgctTTTACTCATCAAATTAAATCAGCAGCAGAATAAGAGTGAGTGGGTGATTGATTTGCATTGTAGGTGCTGATCAAACAAAATGTGTCTAAAATACAATTGTTGGACATACAAACATTATCATGGCATAAATTTTACCATTAAACATAATTGTTGAAATAATCAAATCAGATAAAGTCTCCATTCATGGCTCCTAATGCCCACAGAGGAGTGGTAGAAATGATAAAAACAGATAAATTATTAGGTTATTCGATTATTAGGTAATGGTCTCTATTAAGACCAAGGGAACTTAATTGGATGGTAAATAGTGCTTTTGTTAAACATACTGCAAAATCTATTTACTTGGTCTGTCTTAAATCCATGCCACCTTTTTTAGTGTCATAACATAGTTAAgatttacaaaaacaagtagtgtaAAACATCTGAGAACATCTAAGCTATTATTTGTATAGAAGGGTCATTATGTGAAATACAAACTAAAGTAACAATTTATTTGCATTTCATGGCGTAGTACAGTATTTACACCTGTTTGGAGATGGCATCTGTTTTCTGTTGAAAAGGCAGCAGCATTATAACTTTTGTATTGCAGCTTAGTTTAGTTGAGGGGTTAGTCTTAGTTCACATTAGAACGCATACAAACGTCTTCATCACAGATTTCCTTCATGATCCAGCATTGCCTGGCTGCCAGGGGCCAGAGATAGAGGGATGTAGAGTATGGGGGAGAAATCAAAGGCGGTAGTCAACAGCTGTGCTCAGCTCTCTTCTAATCTCAAACTTCAGATACTGCTTGTTCACAGTGATTCTGAGTAGGCACTGCACAAATGGGcctgtattaaaaataaaaaaaaaagtgtcctaCAATAGCATTGCTGATATAGTGCAGGTCCTCTGTGTCCATATAATCATagtcattatgatctaaaaggctaaacaaATCCTATATCAATACTCCTAGTCCGAGACCATTTATGAATATGGACAGATCTGTAAATCGGATTCGTAAATCAACTAAACAGTCTGATAATGAAGTACATGACCAACTTTTTCCACCCATACTATTTCTAGATTAACAGGTCTGAATTGTGCTTGCTCCAAACCCACACCTGTGAACAAGCAGTGAGGCTATAGACAACCAACAAGAGGATACATCTACATTAGCCAATCAGAGCACTTTTCCCCTCACAACAAAAACAATACCTTTGCTTTTCTCCTTATGGTCTGACTGAAGCCTCTGTCTCATTATTTAAACTTGTACCATTTCAAGAGGCCACATGACAGTATGAGCCATTGATAAAAGCCTGGCACTTTCAGTACCATAAAGTCCTTCTTTTTACACAACGAAATCCGACATAACAAAACACACACGTCGTCGTCAGTTGACGACGAGTCGCGTCAACGTTGTACAAAGGAAAAAGAGTTCATCTTGTAGAGATGGATCGGTCATCTCCACACTGCAGAGAATATATAGGTTGAATGAGAGGCACTGGGGGTAAGGTCTCTGTTTGGTCGTTTTGAGA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047323 False 2676 lncRNA 0.35 2 21664850 21667555
TU2047325 True 3547 lncRNA 0.36 2 21664850 21668426

Neighbor

gene id symbol gene type direction distance location
LOC110501588 LOC106581699 coding downstream 73851 21572564 ~ 21590999 (-)
LOC110501587 LOC106586113 coding downstream 217647 21143084 ~ 21447203 (-)
LOC100136257 LOC100136257 coding downstream 887693 20765912 ~ 20777157 (-)
LOC110501586 LOC106581869 coding downstream 924896 20730910 ~ 20739954 (-)
LOC118943627 NA coding downstream 972536 20690516 ~ 20692314 (-)
LOC110501591 LOC106581664 coding upstream 40455 21708881 ~ 21766231 (-)
LOC110501594 LOC106581696 coding upstream 120002 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 254374 21922800 ~ 21936414 (-)
stk17b LOC106581692 coding upstream 268088 21936514 ~ 21957704 (-)
hecw2a LOC106581691 coding upstream 300726 21969152 ~ 22021354 (-)
G1788496 NA non-coding downstream 100246 21564334 ~ 21564604 (-)
G1788278 NA non-coding downstream 174460 21490190 ~ 21490390 (-)
G1788277 NA non-coding downstream 175501 21489121 ~ 21489349 (-)
G1788266 NA non-coding downstream 188110 21476524 ~ 21476740 (-)
G1788252 NA non-coding downstream 211231 21453414 ~ 21453619 (-)
G1788661 NA non-coding upstream 109366 21777792 ~ 21778222 (-)
G1788664 NA non-coding upstream 113015 21781441 ~ 21781669 (-)
G1788854 NA non-coding upstream 114789 21783215 ~ 21785625 (-)
G1788859 NA non-coding upstream 119464 21787890 ~ 21788186 (-)
G1787166 NA other downstream 1208867 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1318836 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2005750 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2342991 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 2485666 19175567 ~ 19179266 (-)
G1789581 NA other upstream 749704 22418130 ~ 22419498 (-)
G1790280 NA other upstream 1496055 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1764568 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2658303 24326729 ~ 24327127 (-)

Expression


Co-expression Network