G1788854


Basic Information

Item Value
gene id G1788854
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21783215 ~ 21785625 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047635
ATATTATGCATAATTATTGAATAATCACATTAATCACAGTATCGATTTAGGTTTTATGTATCAAGGTAAGGGGATACTTTTGGTTAGAAGCATTTGATTTTGCAATGCATACTTTATTTTGGATTTATGTGCCCATAAACTGTTCACCCCCTAACATAAAGAGACACAAAATGTTACATagttacactgcatttctgaaaTCCTTATAGAAGAAACTGTCAGACAGCTGGATCCAGGATTCAAGTTCCACTTAACTGATTAATTCTCAATATATGATACAACGATAACTTACACAGCCGTAAATGCAAGGCCAGAAAAGTAATGTTTTATGTCACACGATTTTGGACAAATCCGTCAAGACACCAACCATAAAGGGTTAAACATTGGTTTAAAATCAACTCATTAATTGTATTGAATATAGCTATGATTCCCCATTATATCTTAATGTAATGGGATGGGAAAAAATTGCAGATTATTATCAACAGCTGTAACAAGTTGTCCAGTGAATCCTCACTGGTGCCCTAGTTTATAAAAGAAAAAGACCCATATATGTTACCTATTGTATTGCCCCCATATTCCCAACTGACCATAGTCCAGCCTACATCATCACTCATGACAAAATGGGTAaatgtattatgacagaaaaAGCCTTTGGGCTTTCTGAGAATCAAGCCAAAAAATGCCTAAAACTATTGGGATACATATCAGGTACATTTTCAATATGACTACTCTATGTATACTCCCTATAAACAAACAAAGggaaatctgcagttcaaacgATTACAAAGCACATCCCCCTCCACCGTTTTGGTAAAAGCTGGTGGGTcttgagaaatgtaaccactctcaaattcatagacagggatacagatgcaaggactgaccatccatgatatcacaattatagttttaaccatgtttttaggctgtagagtgtttgtttacaattacattgtgacaaacaatggagtaaaacaagcttatattttgggttctgaaggGGTATGACAGCTAAGCTAATGGGCCATTTGTAAGTTAAACTCTTTAAACATAATGGGTATgtatcattcatttaaaagtccCAAAATGGATACAAccacagattgcccctttaaactaTTGTGTAACATTAATTGACGACAATGAAATGTTTGTCAACAGATTGTAATGCAATTTCAAACAAATAAGTAATTTGACTAGATGCCACTTAAAATGTTCTGCTTTCCCCTAATACACACTAACACGTACACATCAGTGTTTACATTCATTATAACCCTTTAATTATTGCAATTTTTCATTTATATGTAAGAAAATAGGAGTAACTGTCCATTGTTGTTTTGAGTATCGCAATATACAGGTAACAGCAAAAATAAAGGACGTTGGGCCACCAGGAACTGCCAGAACTTCACACTTTAAaacccctatgctcctttgagacccctatttcaaagtcactgagatatcttcgagccatggtagccaaaataataggcaacacacagctcagaaacccatgcataccccacaagacatgccaccagaggtctcttcacagtccccaagtccagaccagattatgggaggcgcacagtactacatcgagccatgactacacggaactctattccacatcaagtaactgatgcaagctgtagaatcatatttaaaaaaacagataaaaatgtcACCTTGGAacaacagggactgtgaagagacatgcatacattgtgatattgttgtatggtggtattgaacattttGTGTTGAGGATATGTGATGGTGTAGGGATGTTATACAAACATAGTtcactgttttatcttttgttttatatataattttgctttggtgtgtttggaccccaggaagagtaactgatgccttggcagcagctaatggggatccctaataaatacaaatacaaatgatGGTATGTTAATTGCTtattaattaactcaggaaccacacctgtgtggaagcacctgctttcaatatactttaaaTCCCTagtttactcaagtgtttcctttattttggcagttgccTGTACATGTGTAATGTATACTAGCCATTTAAACCATTCTAAAGTGTCAATCAAGTCTTCCGATGTGGTACTAGTAGAGAGAGTATAGAGTCTGTGTTTTGATATTTATGGAGAGTCAATTTCAAAGGACTATTGTATTTTTCTAGCATTCCTGTCTTAATACCCAGTATTTGTATGCGGTACTATGTATTATGATTAGTGTTCTTCACCATTTCTTCTCAGCTGCCTGTTTTTCTATGAACCCAATGCCAGTTATGTTCCCACATGTGATAATTTCTCCAATGTTTGACAGTAATATCTTCTGTTCCATGCTAAACTATTATCAGGGTGAAATAAACTACTTCAGCACTTATGGTGTTGCTACAACCAT

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047635 True 2411 lncRNA 0.36 1 21783215 21785625

Neighbor

gene id symbol gene type direction distance location
LOC110501591 LOC106581664 coding downstream 16984 21708881 ~ 21766231 (-)
LOC110501588 LOC106581699 coding downstream 192216 21572564 ~ 21590999 (-)
LOC110501587 LOC106586113 coding downstream 336012 21143084 ~ 21447203 (-)
LOC100136257 LOC100136257 coding downstream 1006058 20765912 ~ 20777157 (-)
LOC110501586 LOC106581869 coding downstream 1043261 20730910 ~ 20739954 (-)
LOC110501594 LOC106581696 coding upstream 2803 21788428 ~ 21913721 (-)
ftcdnl1 LOC106581695 coding upstream 137175 21922800 ~ 21936414 (-)
stk17b LOC106581692 coding upstream 150889 21936514 ~ 21957704 (-)
hecw2a LOC106581691 coding upstream 183527 21969152 ~ 22021354 (-)
LOC110502069 LOC106582011 coding upstream 453553 22239178 ~ 22636506 (-)
G1788664 NA non-coding downstream 1546 21781441 ~ 21781669 (-)
G1788661 NA non-coding downstream 4993 21777792 ~ 21778222 (-)
G1788570 NA non-coding downstream 114789 21664850 ~ 21668426 (-)
G1788496 NA non-coding downstream 218611 21564334 ~ 21564604 (-)
G1788278 NA non-coding downstream 292825 21490190 ~ 21490390 (-)
G1788859 NA non-coding upstream 2265 21787890 ~ 21788186 (-)
G1788856 NA non-coding upstream 111971 21897596 ~ 21898128 (-)
G1788964 NA non-coding upstream 155117 21940742 ~ 21941547 (-)
G1788980 NA non-coding upstream 178997 21964622 ~ 21965058 (-)
G1787166 NA other downstream 1327232 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1437201 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2124115 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2461356 19321188 ~ 19321859 (-)
LOC110501547 LOC106586143 other downstream 2604031 19175567 ~ 19179266 (-)
G1789581 NA other upstream 632505 22418130 ~ 22419498 (-)
G1790280 NA other upstream 1378856 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1647369 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2541104 24326729 ~ 24327127 (-)

Expression


Co-expression Network