G1788737


Basic Information

Item Value
gene id G1788737
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21879699 ~ 21960257 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047501
GGCCTTTGAGAGACTGAGACCCATCCTTtaaaaagagcacacagtgccaccgacagaACAAATGCAGATTAACACCAAAAagcatatttatatatacagtggggcaaaaaagtatttagtcagccaccaattgtgcaagttctcccacttaaaaagatgagaggcctgtaaattttcatcataggtacacttcaactatgacagacaaaatgagaaaaaaaattccagaaaatcacattgtaggatttttaatgaatttatttgcaaattatggtgggaaataagtatttggtcacctacaaacaagcaagatttctgtctctcacagacatgtaacttcttctttaagaggctcctttgtcctccactcgttacctgtattaatggcacctgtttgaacttgttatcagtataaaagacacctgtccacaacctcaaacagtcacactccaaactccgctatggccaagaccaaagagctgtgaaaggacaccagaaacaaaattgtagacctgcaccaggctgggaagactgaatctgcaataggtaagcagcttggtttgaagaaatgaactgtgggagcaattattaggaaatggaagacatacaagaccactgataatctccctcgatctggggctccacgcaagatctcaccccgtggggtcaaaatgatcacaagaacggtgagcaacaatcccagaaccacacggggggacctagtgaatgacctgcagagagctgggaccaaagtaagaaagcctaccatcagtaacacactacgcctccagggactcaaatcctgcagtgccagacgtgtccccctgcttaagccagtacatgtccaggcccgtctgaagtttgctagagagcatttggatgatccagaagaagattgggagactgtcatatggtcagatgaaaccaaaatataactttttggtaaaactcaactcgtcgtgtttggaaaacaaagaatgctgagttgcatccaaagaacaccatacctactgtgaagcatgggggtggaaacatcatgctttggggccgtttttctgcaaagggaccaggacgactgattcgtgtaaaggaaagaatgaatggggccatgtatcgtgagattttgagtcagcaagggcattgaagatgaaatgtggctgggtctttcagcatgacaatgatcccaaacacaccgcccgggcaacgaaggagtggcttcgtaagaagcatttcaaggtcctggagtggcatagccagtctccaaatctcaaccccatagaaaatctttggagggagttgaaagtccatgttgcccagcaacagccccaaaacatcactgctctagaggag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047501 True 1350 lncRNA 0.44 2 21879699 21960257

Neighbor

gene id symbol gene type direction distance location
LOC110501590 LOC106581697 coding upstream 178406 21669516 ~ 21701293 (+)
LOC110501589 LOC106581698 coding upstream 212296 21628544 ~ 21667403 (+)
LOC110502066 NA coding upstream 934528 20943924 ~ 20945171 (+)
twist2 twist2 coding upstream 1514167 20359640 ~ 20365532 (+)
LOC110502064 LOC106581735 coding upstream 1535743 20338128 ~ 20343956 (+)
esyt3 LOC106581688 coding downstream 75115 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 116120 22076377 ~ 22079829 (+)
LOC110501601 LOC106581998 coding downstream 273007 22233264 ~ 22235783 (+)
LOC110501603 NA coding downstream 1084359 23044616 ~ 23050204 (+)
LOC110502117 NA coding downstream 1092781 23053038 ~ 23055743 (+)
G1788669 NA non-coding upstream 90147 21789296 ~ 21789552 (+)
G1788668 NA non-coding upstream 93296 21786089 ~ 21786403 (+)
G1788667 NA non-coding upstream 95980 21783213 ~ 21783719 (+)
G1788659 NA non-coding upstream 101476 21777892 ~ 21778223 (+)
G1788648 NA non-coding upstream 108471 21771029 ~ 21771228 (+)
G1788791 NA non-coding downstream 8382 21968639 ~ 21971927 (+)
G1788792 NA non-coding downstream 13350 21973607 ~ 21974527 (+)
G1788793 NA non-coding downstream 15236 21975493 ~ 21975781 (+)
G1788794 NA non-coding downstream 16152 21976409 ~ 21976620 (+)
G1788795 NA non-coding downstream 16455 21976712 ~ 21977322 (+)
G1787719 NA other upstream 743222 21134265 ~ 21136477 (+)
G1786330 NA other upstream 1595128 20283181 ~ 20284571 (+)
asb1 asb1 other upstream 1597845 20269646 ~ 20281952 (+)
G1785947 znf142 other upstream 2217773 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 2251939 19603742 ~ 19627954 (+)
G1788811 LOC106581691 other downstream 35107 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 38216 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 1455836 23416093 ~ 23432383 (+)
G1790805 NA other downstream 2158305 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 2433811 24394068 ~ 24423067 (+)

Expression


Co-expression Network