G1788792


Basic Information

Item Value
gene id G1788792
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 21973607 ~ 21974527 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047568
AGTAACACCTGATTCCATCAAAGGCATGATCTAAATCTTTAAAGACTAACATTAGATGATTAATATAATCAGGGGCGTTACTAGTTGGCTGGAAAAATATCCTCCCACACCGTCTGACTCTCCAAGGCTAAAACtgccccccgctgctcctcggtCTCTACCTCCTCTGTACTCTGTGTTGTTTCTCCAGTCGGCCAGGTCGATCTCTGCAGTGCCAGCAATCACCAACTCCAGCTCTCTGGCATCAAACACAGACACCAGCCTCACGTCCACCACCTGACCAACACATGTCACAATTCTGATACATTTTCTATTACAGAGACATTACCACCTGGCCAAGACATATCACAATACTAATATACTCCTAATACATTAGGAGTAACCACATAAATTGTTATTGGCATGCATGATTATCTATTTCAGATAAATTACCCCTTGCTGCATCATTATCTATTACACAATAGCTGACGTAGCGCTGCATCATTATGCGGATACAATGCCACTTGACCAATACATTTGACAATGATAGACCATTATCAATGATGTGTGTGATGTCATAGGGCCCTGTGTTTTGTGTAACTATGTCACAACCtggatttgaacctttatttaaagcTTTTTCATCAAACTATCCCCTTTTCTTTTTATGTCAGATTTTCCAGCACTATCCTCAGACAATTGCTTAGATTTTTCTGTAATTCTAATTTCTGTCTAAGGCTTAAAATACAGGATAAAATCTTGCTATGTCACATGATTGCACAAAACACAGAGCCCTACCTCATAGAAGCCTCGCACCAGGCTCTCAGTCTGCTGAGCCACACCCCTTTCAATGCGCCACTTAACCATGCGCTCGATGTACTCCTTCTTATTCTTCTCTGACACTGGAACACCTGCACCGCCTGgcttcagctctctctctgt

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047568 True 921 lncRNA 0.42 1 21973607 21974527

Neighbor

gene id symbol gene type direction distance location
c22h2orf69 cssa21h2orf69 coding upstream 38902 21929362 ~ 21934705 (+)
LOC110501590 LOC106581697 coding upstream 272314 21669516 ~ 21701293 (+)
LOC110501589 LOC106581698 coding upstream 306204 21628544 ~ 21667403 (+)
LOC110502066 NA coding upstream 1028436 20943924 ~ 20945171 (+)
twist2 twist2 coding upstream 1608075 20359640 ~ 20365532 (+)
esyt3 LOC106581688 coding downstream 60845 22035372 ~ 22076238 (+)
LOC118943635 NA coding downstream 101850 22076377 ~ 22079829 (+)
LOC110501601 LOC106581998 coding downstream 258737 22233264 ~ 22235783 (+)
LOC110501603 NA coding downstream 1070089 23044616 ~ 23050204 (+)
LOC110502117 NA coding downstream 1078511 23053038 ~ 23055743 (+)
G1788791 NA non-coding upstream 1680 21968639 ~ 21971927 (+)
G1788737 NA non-coding upstream 13350 21879699 ~ 21960257 (+)
G1788769 stk17b non-coding upstream 15956 21943062 ~ 21957651 (+)
G1788768 stk17b non-coding upstream 33198 21936520 ~ 21940409 (+)
G1788669 NA non-coding upstream 184055 21789296 ~ 21789552 (+)
G1788793 NA non-coding downstream 966 21975493 ~ 21975781 (+)
G1788794 NA non-coding downstream 1882 21976409 ~ 21976620 (+)
G1788795 NA non-coding downstream 2185 21976712 ~ 21977322 (+)
G1788797 NA non-coding downstream 3547 21978074 ~ 21978353 (+)
G1788798 NA non-coding downstream 4283 21978810 ~ 21979139 (+)
G1787719 NA other upstream 837130 21134265 ~ 21136477 (+)
G1786330 NA other upstream 1689036 20283181 ~ 20284571 (+)
asb1 asb1 other upstream 1691753 20269646 ~ 20281952 (+)
G1785947 znf142 other upstream 2311681 19661109 ~ 19661926 (+)
LOC110501568 cnot9 other upstream 2345847 19603742 ~ 19627954 (+)
G1788811 LOC106581691 other downstream 20837 21995364 ~ 21996093 (+)
G1788815 LOC100136012 other downstream 23946 21998473 ~ 21999623 (+)
G1790442 LOC106582152 other downstream 1441566 23416093 ~ 23432383 (+)
G1790805 NA other downstream 2144035 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 2419541 24394068 ~ 24423067 (+)

Expression


Co-expression Network