XLOC_037137 (cops8)


Basic Information

Item Value
gene id XLOC_037137
gene name cops8
gene type coding
species zebrafish (Danio rerio)
category of species model fish

Chromosome Information

Item Value
chromosome id NC_007120.7
NCBI id CM002893.2
chromosome length 56459846
location 23895711 ~ 23906205 (+)
genome version GRCz11_2017_zebrafish_Genome

Sequence

>TCONS_00073101
ACTGTGTCGCCGTTGAGCCGGAGAAGCAGCTGTTTGTTTTCCTTAGCCGTTAGCATATGAAGCTCCTGTAAAAGATGCCCGTGTGTGTCATGATGGCTGAACTTGATGAAAAGCTGCTGTTGCAGTTTGAAACCCAGGAGCTGGAGGCTCCTGGTGGCATTGCAACGCCTCAAGTATATTCCCAGTTATTAGTCTTGTATCTCCTGCACAACGACATGAATAATGCCAGATACCTTTGGAAACGGATACCCCAAGCAATCAAAACAGCAAACCCAGAGATGGCAGCTATATGGGCTGTAGGACAGCGGATCTGGCAGCGAGACTTTCCAGGCATCTACTCTGCTATTGCTGCTTACCAGTGGTCTGAAAGCATTCTCCCTGTGATGGAAGCTTTAAGAGAGTCAACTCGTAGGAGGGCATATGGGCTAGTGGCTCAAGCTTACACCTCTATCAGTGCAGAAGACTTTGCTGCTTTTGTGGGATACTCGGTAGAAGAGGCCGTCAAAGGTGTAGTAAGTCATGGGTGGCAGGCAGATCCAAACACCAGGATGATCATGCCACAGAAACCAGATCCGCCTCCGGTCTCGCTGGTTCCAAACGAACAACAGCTGGCCAGACTTACCGACTACGTGGCTTTTCTTGAGAACTGATAAGCACTCCGCCCTCTCCCATCCTCTTCCTCACCTTCTCTCAGATACTCTGTTTTTCAGAAGAAAGATTCTGGTGTCCAGGACCCTTCACGAATCCGGTCCTGTCCAGTGATGGAACTGCTGTCGCTCTCTTTCCTGTTTTGCTTCTTGAACCCGTCAGCCACAGTGATATAGGACAATTCCCAAATAGTTTTACATGTACAAATCTGCTTTGGAGTATGCTGTcaatattgtaaattattattttttggcatAAATACTTCACTTTATGCACATTGTTCTGGTGGTTTCTGTTAGTTTAATTTTACGTGTCAAACAAAATCCCTCATTATGATTTGTTCATATGCCTGATGTCATTTTATAAGATTTTATACAATTAGCGGGGAATCAAGGTGGCTTGCAATACGTCGACCAAATTTTAAACCAAATGTGTGTGGGTATTTTACCTTTCTTAATCTAGAAAATAGGCCCATGCAAGTCTGCAAGTAAGTAGGTTTTTATGATtgtccagaaaaaaagaaaaaaccctTTGTCTTGAAGGTATTGTTTAGCAGTGCTAACAACCGACAGCTTATTTTGGGTGGCTCACAGTTGTATTTAAGATGTTTTCCACTGTCTGACAAGTGTTTTGTTGACAGTGCATCTCTGTCTGCTGTTCAGATGTTTTGCACCGCTTCCTTGGTTTCTCACGCAGAGTGGTTTTGAAAAAGAAGAGGAAACATACCAGCTGTTGGCTATCGTCATGTCCTTTCAGCTTAAGGATAAAAGCTCCATATGTGCTGAAACAACCGACACATATGGTACTGTGAGAAATTAACACCATTCATTTTTACTGATTGTTTGACCTTAAATGTTATCTTCACGATAAATGTCTTTAGTTTCTTGAAATGTTAA
>TCONS_00073102
GTGTGTCATGATGGCTGAACTTGATGAAAAGCTGCTGTTGCAGTTTGAAACCCAGGAGCTGGAGGCTCCTGGTGGCATTGCAACGCCTCAAGTATATTCCCAGTTATTAGTCTTGTATCTCCTGCACAACGACATGAATAATGCCAGATACCTTTGGAAACGGATACCCCAAGCAATCAAAACAGCAAACCCAGAGATGGCAGCTATATGGGCTGTAGGACAGCGGATCTGGCAGCGAGACTTTCCAGGCATCTACTCTGCTATTGCTGCTTACCAGTGGTCTGAAAGCATTCTCCCTGTGATGGAAGCTTTAAGAGAGTCAACTCGTAGGAGGGCATATGGGCTAGTGGCTCAAGCTTACACCTCTATCAGTGCAGAAGACTTTGCTGCTTTTGTGGGATACTCGGTAGAAGAGGCCGTCAAAGGTGCGTGTTTTTGAGATTTGAGTGCTCATTGCTTGGACTttcatatgtttattattatttttactccAACCATTAATTTTTAGTTCATGTCTTTCTTTATGGTCTTTTGCAAagaaatataatgtaatgtttttgtcatt

Function

symbol description
cops8 Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8).

GO:

id name namespace
GO:0000338 protein deneddylation biological_process
GO:0010387 COP9 signalosome assembly biological_process
GO:0008180 COP9 signalosome cellular_component
GO:0005634 nucleus cellular_component
GO:0005737 cytoplasm cellular_component
GO:0003674 molecular_function molecular_function

KEGG:

id description
ko04121 Ubiquitin system

ZFIN:

id description
ZDB-GENE-040426-982 Predicted to act upstream of or within COP9 signalosome assembly and protein deneddylation. Predicted to be located in cytoplasm and nucleus. Predicted to be part of COP9 signalosome. Orthologous to human COPS8 (COP9 signalosome subunit 8).

Ensembl:

ensembl_id ENSDARG00000024846

RNA

RNA id representative length rna type GC content exon number start site end site
TCONS_00073101 False 1544 mRNA 0.43 7 23895711 23906205
TCONS_00073102 True 565 lncRNA 0.43 5 23895793 23904416

Neighbor

gene id symbol gene type direction distance location
XLOC_037136 NA coding upstream 8430 23884356 ~ 23887281 (+)
XLOC_037135 ints6 coding upstream 54007 23825440 ~ 23841704 (+)
XLOC_037134 dhrs12 coding upstream 83075 23808546 ~ 23812636 (+)
XLOC_037133 si:ch211-219a4.3 coding upstream 116186 23765587 ~ 23779525 (+)
XLOC_037132 faima coding upstream 140374 23748133 ~ 23755337 (+)
XLOC_037139 mlphb coding downstream 102674 24008879 ~ 24023369 (+)
XLOC_037140 prlh coding downstream 118822 24025027 ~ 24025404 (+)
XLOC_037141 lrrfip1a coding downstream 159650 24065855 ~ 24115589 (+)
XLOC_037142 maip1 coding downstream 214831 24121036 ~ 24123931 (+)
XLOC_037143 pgap1 coding downstream 219240 24125445 ~ 24145714 (+)
XLOC_037131 BX957274.1 non-coding upstream 195255 23696924 ~ 23700456 (+)
XLOC_037127 NA non-coding upstream 439366 23363848 ~ 23456345 (+)
XLOC_037128 CR392363.1 non-coding upstream 528502 23364242 ~ 23367209 (+)
XLOC_037126 NA non-coding upstream 561732 23321834 ~ 23333979 (+)
XLOC_037147 BX571803.2 non-coding downstream 477929 24384134 ~ 24387531 (+)
XLOC_037148 BX571803.4 non-coding downstream 517587 24423792 ~ 24427240 (+)
XLOC_037151 BX323457.3 non-coding downstream 1160456 25066661 ~ 25067730 (+)
XLOC_037152 BX323457.2 non-coding downstream 1167334 25073539 ~ 25074199 (+)
XLOC_037153 NA non-coding downstream 1172958 25079163 ~ 25080305 (+)

Expression


Co-expression Network