G1789168 (LOC106581998)


Basic Information

Item Value
gene id G1789168
gene name LOC106581998
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22234719 ~ 22235760 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2047973
AAAAATAGTTTTATGTAAAAAGAAATAAGTTAAGAGTCCGATCAGCAGCTCTTCTTGGTCTGtatcctctccttcacccctccCCATCCCAAAACACACACCCCTTTGCCCCGACTGTTCTTCACCCACCACAGTGTtcaaaacatttttaacaaaacaaacaaatCTCATCCTTTGTCTATCCTTCTGTTCAACGGTCCATTCAGATCTAACGGTTGGTTAACAGTTAGTTAGATTTacattctgtttgtctgtcctTTAGATATTAAGGTCCAGTCCAGAACCAACCCCACAGGTGTTGAGCTGAAGATTGGATAGATGTGACATAGCAAAACTGTTCCTTTATAGCCTACCAGAGGGCAGAGTGGAGCTGCCATATTGCTTATTTAAATACAATAATGTCAGATATACATGAAGTATGTAGAGGGTAGGGGCTAGGAGGTAGGGGTAAGGGGCTAGGGGAAGTGGGGGTAAGGGCTagggcagcgtttcccaaactcagtcctcgggaaaccctgggctAGGGGCAAGGTTAAGTTTCTAGAGGGTAGGGGCTAGGTGAAATTGCCTAGGGAGTAGGGGCTAGAAGTGCCTATAACTTATAGGGGGCCATATCTAAGGGTTGTTTCTGGACGAGACCATGGAAAGCATCTACTTCCCATAGAACATCTCCAGTAGGACATCCTCCATGTTGACAGCTCCGATGACGGGCTTGAAGAAGAGCTGTGCAACCACGGCGGGGCTGATGGCCCTAAGCATGGACAGGGTGATGAGCAGTTTGGCGAAGCGTGTGGTGTCGTCCCGGTGGATCAGCTTCACGTGCTCGTTGAGCGCCTGGTGAGCCTCGCGCCGCAGTGACTGGATGTAGTGGAGGTAGCGCAAACC

Function

NR:

description
nuclear receptor subfamily 0 group B member 1-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2047973 True 885 lncRNA 0.49 2 22234719 22235760

Neighbor

gene id symbol gene type direction distance location
hecw2a LOC106581691 coding downstream 213365 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 277015 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 298305 21922800 ~ 21936414 (-)
LOC110501594 LOC106581696 coding downstream 320998 21788428 ~ 21913721 (-)
LOC110501591 LOC106581664 coding downstream 468488 21708881 ~ 21766231 (-)
LOC110502069 LOC106582011 coding upstream 3418 22239178 ~ 22636506 (-)
LOC110501602 LOC106582008 coding upstream 754934 22990694 ~ 22996267 (-)
LOC118943636 LOC106582008 coding upstream 788210 23023970 ~ 23042872 (-)
dcbld2 LOC106582006 coding upstream 820884 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 962006 23197766 ~ 23235688 (-)
G1789159 NA non-coding downstream 6313 22228203 ~ 22228406 (-)
G1789146 NA non-coding downstream 12895 22221556 ~ 22221824 (-)
G1789140 NA non-coding downstream 17663 22216850 ~ 22217056 (-)
G1789124 NA non-coding downstream 38797 22195704 ~ 22195922 (-)
G1789113 NA non-coding downstream 53716 22180719 ~ 22181003 (-)
G1789528 NA non-coding upstream 102585 22338345 ~ 22339193 (-)
G1789574 NA non-coding upstream 163276 22399036 ~ 22400728 (-)
G1789587 NA non-coding upstream 194728 22430488 ~ 22430688 (-)
G1789620 NA non-coding upstream 253098 22488858 ~ 22498544 (-)
G1789619 NA non-coding upstream 265895 22501655 ~ 22520671 (-)
G1787166 NA other downstream 1778736 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 1888705 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2575619 19655763 ~ 19666201 (-)
G1785753 NA other downstream 2912860 19321188 ~ 19321859 (-)
G1789581 NA other upstream 182370 22418130 ~ 22419498 (-)
G1790280 NA other upstream 928721 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1197234 23368423 ~ 23460589 (-)
G1791405 NA other upstream 2090969 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 2612831 24848591 ~ 24849752 (-)

Expression


Co-expression Network