G1789574


Basic Information

Item Value
gene id G1789574
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22399036 ~ 22400728 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2048412
aggagagtggttatagactagatattattatagagacaagaggagagacaagaggagagtgattacagactagatattattatagagatggaagagagacaagaggagaatgGTTATtgactagatattattatagagacaagaggagagtgattacagactagatattattatagagatggaggagagacaagaggagagtggttatagactagatattattatatagatggaagagagacaagaggagaatgGTTATtgactagatattattatagagacaagaggagagtggttggagactagatattattatagagacaagaggagagtgattacagactagatattattatagagatggaggagagacaagaggagagttgttatagactagatattattatagagacaagaggagagtggttatagactagatattattatTGAGACgaaagagacaagaggagagtggttatagactagatattattatagagacaagaggagagtggttatagactagatattattatagagacaaaaGGAGAGTGGTTGTAGACaagatattattatagagacaagaggagagtggttatagactagatattattatagaggCAAGAGGGGAGACGAGGAGAATGGTtatagactagatattattatagagacaagaggagagtggttagagactagatattattatagagacaagagaggagacaagaggagagtggttatagactagatattattatagaggcaagaggagagtggttatagactagatattattatagagatggaggagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagatggaggagagacaagaggagaatggttatagactagatattattatagagacaagaggagaatggttatagactagatattattatagagacaagaggagagtggttatatactatatattattatagagacaagaggagagacaagaggagagtggttatagactagatattattatagagtcaagaggagagtggttatagactagatattattatagagacaagaggagagtggttatagactagatagtattatagagacaagaggagagtggttgtaaactagatattattatagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtggtaatagactagatattattagagacaagaggagagtggttatagactagatattattatacagacaagaggagagtggtaatagactagatattattagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtggttttagactagatattattatacagacaagaggagagtggtaatagactagatattattagagacaagaggagagcggttgtagactagatattattatagagacaagaggagagtcaAGAGGCCTAGAAAAGAAAAGAGTTGAAGAATAGGTTGACTGTTGTGATGGTTTACTTGTAAGATAGTGTTTCGGTCC

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2048412 True 1642 lncRNA 0.34 2 22399036 22400728

Neighbor

gene id symbol gene type direction distance location
hecw2a LOC106581691 coding downstream 377682 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 441332 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 462622 21922800 ~ 21936414 (-)
LOC110501594 LOC106581696 coding downstream 485315 21788428 ~ 21913721 (-)
LOC110501591 LOC106581664 coding downstream 632805 21708881 ~ 21766231 (-)
LOC110501602 LOC106582008 coding upstream 589966 22990694 ~ 22996267 (-)
LOC118943636 LOC106582008 coding upstream 623242 23023970 ~ 23042872 (-)
dcbld2 LOC106582006 coding upstream 655916 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 797038 23197766 ~ 23235688 (-)
LOC110502001 LOC106582154 coding upstream 897586 23298314 ~ 23327132 (-)
G1789528 NA non-coding downstream 59843 22338345 ~ 22339193 (-)
G1789168 LOC106581998 non-coding downstream 163276 22234719 ~ 22235760 (-)
G1789159 NA non-coding downstream 170630 22228203 ~ 22228406 (-)
G1789146 NA non-coding downstream 177212 22221556 ~ 22221824 (-)
G1789140 NA non-coding downstream 181980 22216850 ~ 22217056 (-)
G1789587 NA non-coding upstream 29760 22430488 ~ 22430688 (-)
G1789620 NA non-coding upstream 88130 22488858 ~ 22498544 (-)
G1789619 NA non-coding upstream 100927 22501655 ~ 22520671 (-)
G1789659 NA non-coding upstream 154290 22555018 ~ 22555252 (-)
G1789663 NA non-coding upstream 157521 22558249 ~ 22558473 (-)
G1787166 NA other downstream 1943053 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2053022 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2739936 19655763 ~ 19666201 (-)
G1785753 NA other downstream 3077177 19321188 ~ 19321859 (-)
G1789581 NA other upstream 17402 22418130 ~ 22419498 (-)
G1790280 NA other upstream 763753 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 1032266 23368423 ~ 23460589 (-)
G1791405 NA other upstream 1926001 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 2447863 24848591 ~ 24849752 (-)

Expression


Co-expression Network