G1789620


Basic Information

Item Value
gene id G1789620
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22488858 ~ 22498544 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2048463
tgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgaagagagagcgagagagagagagagcgagagagagagagagcaagagagagagagagagaaagcaatagagagagaaagcaagagagagaaagcaatagagagagaaagcaatagagagagcaatagagagagagcaatagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagagcaatagagcgagagagcaatagagcgagagcaatagagagagagagcaatagagagtgagagagcaatagagagtgaaagagcaatagagagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagagcaatagagagatagagagagcaatagagagaaagcaatagagagagagcaatagagagagagcaatagagaaagagagcaatagagcgagaaagagagcaatagagcgagaaagagagcaataaagcgagagagagagcgagagagcgagagaaatagagagagagagcgagagagagagagagagagagcaatagagcgaGAGCAAtagcgagagagagcaatagagcgagagcaagagagagagagagcaatagagagagagagcaatagagagtgagagagcaatagagagtgagagagcgagcaatagagagagcaatagagagagcaagagagagagcaagagagagagagagagagcaatagagagagagagaaagagagag
>TU2048464
gaaagcaatagagagagaaagcaatagagagagagagagcaatagagagatagagagagcaatagagagagagcaatagagagagagcaatagagagagagcaatagagcgagaaagagagcaatagagcgagaaagagagcaatagagcgagaaagagagcaataaagcgagagagagagcgagagagcgagagaaatagagagagagagcgagagagagagagagagagagcaatagagcgaGAGCAAtagcgagagagagcaatagagcgagagcaagagagagagagagcaatagagagagagagcaatagagagtgagagagcaatagagagtgagagagcgagcaatagagagagcaatagagagagcaagagagagagcaagagagagagagagagagcaatagagagagagagaaagagagag
>TU2048467
tgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgaagagagagcgagagagagagagagcgagagagagagagagcaagagagagagagagagaaagcaatagagagagaaagcaagagagagaaagcaatagagagagaaagcaatagagagagcaatagagagagagcaatagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagagcaatagagaga
>TU2048469
tgtatattgtatacattgttgctttggcaatattgacacaatgtttttcatgccaataaagcagcttgaatttgaatttgaatttgaagagagagcgagagagagagagagcgagagagagagagagcaagagagagagagagagaaagcaatagagagagaaagcaagagagagaaagcaatagagagagaaagcaatagagagagcaatagagagagagcaatagagagagagcaatagagagagagagcaatagagagagagagcaatagagagagagagagcaatagagcgagagagcaatagagcgagagcaatagagagagagagcaatagagagtgagagagcaatagagagtgaaagagcaatagagagagagagagcaatagagagagagagagcaatagagagagagcaatagagagagagcaatagagcgaga

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2048463 False 823 lncRNA 0.44 3 22488858 22498544
TU2048464 False 431 lncRNA 0.46 3 22488858 22496874
TU2048467 False 344 lncRNA 0.40 2 22496809 22498544
TU2048469 True 444 lncRNA 0.42 3 22497411 22498544

Neighbor

gene id symbol gene type direction distance location
hecw2a LOC106581691 coding downstream 467504 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 531154 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 552444 21922800 ~ 21936414 (-)
LOC110501594 LOC106581696 coding downstream 575137 21788428 ~ 21913721 (-)
LOC110501591 LOC106581664 coding downstream 722627 21708881 ~ 21766231 (-)
LOC110501602 LOC106582008 coding upstream 492150 22990694 ~ 22996267 (-)
LOC118943636 LOC106582008 coding upstream 525426 23023970 ~ 23042872 (-)
dcbld2 LOC106582006 coding upstream 558100 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 699222 23197766 ~ 23235688 (-)
LOC110502001 LOC106582154 coding upstream 799770 23298314 ~ 23327132 (-)
G1789587 NA non-coding downstream 58170 22430488 ~ 22430688 (-)
G1789574 NA non-coding downstream 88130 22399036 ~ 22400728 (-)
G1789528 NA non-coding downstream 149665 22338345 ~ 22339193 (-)
G1789168 LOC106581998 non-coding downstream 253098 22234719 ~ 22235760 (-)
G1789159 NA non-coding downstream 260452 22228203 ~ 22228406 (-)
G1789619 NA non-coding upstream 3111 22501655 ~ 22520671 (-)
G1789659 NA non-coding upstream 56474 22555018 ~ 22555252 (-)
G1789663 NA non-coding upstream 59705 22558249 ~ 22558473 (-)
G1789664 NA non-coding upstream 60633 22559177 ~ 22559548 (-)
G1789671 NA non-coding upstream 67686 22566230 ~ 22566801 (-)
G1789581 NA other downstream 69360 22418130 ~ 22419498 (-)
G1787166 NA other downstream 2032875 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2142844 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2829758 19655763 ~ 19666201 (-)
G1790280 NA other upstream 665937 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 934450 23368423 ~ 23460589 (-)
G1791405 NA other upstream 1828185 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 2350047 24848591 ~ 24849752 (-)
G1792345 NA other upstream 2358280 24856824 ~ 24857885 (-)

Expression


Co-expression Network