G1789671


Basic Information

Item Value
gene id G1789671
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 22566230 ~ 22566801 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2048520
tcctaaagctggccgcgcggcaaaactgagcaatcggggagaagggccttggtcagggcgctccagagttcctctggggagatgggagaacctttcaaaaggacatccatctctgcagcactccaccaatcaggcctttatggtagagtggccagacggaagccactcctcagtaaaaggcacatgacagcccgcttggggtttgccaaaaggcacctaaaggactctgaccatgagaaacaagattctctggtctgatgaaactaagactgaactattttgcctgaatgctaagcgtcatgtctggaggaaacctggcaccatccctactgtgaagcatggtggtggcagcagcatcatgctgtggggatgtttttcagtggcaggaacttgggagactagtcaggatcgagggaaggatgaacagagcaaagtacagagatccttgatgaaaacctgatccagagccctcaggacctcagactggggcaaaggttccccttccaataggacaacgaccctaagcacacagccaagataacacaggagtggcttcgggacaagtctatgaa

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2048520 True 572 lncRNA 0.52 1 22566230 22566801

Neighbor

gene id symbol gene type direction distance location
hecw2a LOC106581691 coding downstream 544876 21969152 ~ 22021354 (-)
stk17b LOC106581692 coding downstream 608526 21936514 ~ 21957704 (-)
ftcdnl1 LOC106581695 coding downstream 629816 21922800 ~ 21936414 (-)
LOC110501594 LOC106581696 coding downstream 652509 21788428 ~ 21913721 (-)
LOC110501591 LOC106581664 coding downstream 799999 21708881 ~ 21766231 (-)
LOC110501602 LOC106582008 coding upstream 423893 22990694 ~ 22996267 (-)
LOC118943636 LOC106582008 coding upstream 457169 23023970 ~ 23042872 (-)
dcbld2 LOC106582006 coding upstream 489843 23056644 ~ 23079508 (-)
LOC110502006 LOC106582004 coding upstream 630965 23197766 ~ 23235688 (-)
LOC110502001 LOC106582154 coding upstream 731513 23298314 ~ 23327132 (-)
G1789664 NA non-coding downstream 6682 22559177 ~ 22559548 (-)
G1789663 NA non-coding downstream 7757 22558249 ~ 22558473 (-)
G1789659 NA non-coding downstream 10978 22555018 ~ 22555252 (-)
G1789619 NA non-coding downstream 45559 22501655 ~ 22520671 (-)
G1789620 NA non-coding downstream 67686 22488858 ~ 22498544 (-)
G1789676 NA non-coding upstream 4920 22571721 ~ 22571927 (-)
LOC110502069 LOC106582011 non-coding upstream 6316 22239178 ~ 22636506 (-)
G1789773 NA non-coding upstream 198952 22765753 ~ 22766067 (-)
G1789791 NA non-coding upstream 208237 22775038 ~ 22775276 (-)
G1789800 NA non-coding upstream 215583 22782384 ~ 22782598 (-)
G1789581 NA other downstream 146732 22418130 ~ 22419498 (-)
G1787166 NA other downstream 2110247 20390516 ~ 20455983 (-)
G1786832 LOC100136012 other downstream 2220216 20345699 ~ 20346014 (-)
znf142 znf142 other downstream 2907130 19655763 ~ 19666201 (-)
G1790280 NA other upstream 597680 23164481 ~ 23169363 (-)
LOC110501997 LOC106582152 other upstream 866193 23368423 ~ 23460589 (-)
G1791405 NA other upstream 1759928 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 2281790 24848591 ~ 24849752 (-)
G1792345 NA other upstream 2290023 24856824 ~ 24857885 (-)

Expression


Co-expression Network