G1790934


Basic Information

Item Value
gene id G1790934
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23472645 ~ 23474765 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2049905
agggagtgaagagaTATCTTAGAACAATTCATGTCCCAACGATAGCTGGGGATTTAAACGAACAAAATCCAGTATTTGAACCGCTTAACTTCTATCATATCTGTTGTTGTCTTTACATATGGCGTTACTAATGTTGCTACTCTTGTAAAATGTCCATTGTTTTTTGTACTTTTATGCATCTGTATGTTGTTTTTCCATGAAATGCTGTGGTCTGCCCACAGGTTTGAGTTTGTTTGATAAACTGTTATACTGTATTTATaagagacaatgtactgtatatatattagtgTATACGCTATATTTTTGTATGGATGCTTTTGACTGGAATGTGAAAAGGTTAACTTGACCCCTAAATGGTCTCCATGTCCTCCTGTTTAGGCCTCAATGGGGGTGGAAGCAGTACaattgaacacacacactttcttaaAATGTGTCTCACACACTTACACTCTTTCTTTGATGCCTGTCTCACAcaaatgcatgtacacacacacacacactcacacacagtcaccTGTCTCTTTGATGTAGCGGCTGCCACAAGGACAGTAGGAGCCTCTGACGGCCTGTCATTTACCTTCGACACTATGTCATTGGCTGACATCTAGAGAACCGCAATGTGATTAGCAGGCTATTAGAGGTGCTGTGTGGTTGACGGGCTGATGAAAAGAGAGATGTGATTTTGCTGAACATCCTGACAAGGATGTCGCTCCTTTCCCAAATCAACCCCCGTAGCCCGAGTGCACTTATGGAGAACTGGATAACTATTAGTGAAACAGTCATCTACACAAGTGCATAGGAGGTATGGGGCAAGGGGTCCATTTGGGGATGCGCATATAGACCTAACACAGAATCGTATCTACACATAATTATACAGTCCCCTCTCAAACCACATACAATCGCTGCACCAATCCTAGTTTAGGCACACTGCCATTGTTCTGCTGCACTCCATCTAATAAACAAGCAGGATACACATTTaaaaaaaaaaaaaatccaagtgCCTGGAAATAACAATCTCATTGTCACACGGGAATAATTATTGCCACGGTATCGCTGCATGTGATGTAATTGGATACTACTGAACATTCGCAGCACACAGGCATGGCTGCACGCACTGCGTACTATAGCCTCGCCTCTCTGCCACTGAGTCACTTCTAGTAGGTCTCAGAGTAGGCCTAGTGTATAGAGAGTTTAACAGTCTGGTAGAATGTGTTTGAAAGAATGTGTGTGATAGAAATAGACAGTAGCCtatgtgggagagaaagagaccgatcgatcgtgtgtttgtctgtgtgtcacaatgggagagagagcgcgcagtGTTTGGCGACACGCAGGATTCGGAGAGAAACGTTGTTTGGACGGTGGCCTTGACCCAGGGGTGACGCACGGCGCCTTGCAGTCAGTAGGCGGGCTAGTACACAGAGGGAGAATAACTACGCCCATGGCTGAAGTCAACCTCGTATGAAATGGGGGAGGCATTAATAGCCTACATTTTTGGACTCGCACAAACTTAACTTCCCGATAGAGGCCAACTGGGAATGGTGCCTCgctttctcaattcaattaaaatgtgctttattggcatggaaaacaggctatgtttacattgccaaagcaagcgaAAAGACAATAAACAAATGTGAAATAAGGAATCAGGAATTAACGGTAGCCTAAACtttagagtagtagtagtagtagggggtAAGTGCCCCCCCCCCTCGTAATTCACATAAAGACCACAAGATATCACCAAATTATTTCCCTGCTGTCACTGTTCTTGCTGAACAAAACTTTTCCTCTGTGTCA

Function

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2049905 True 1809 lncRNA 0.43 2 23472645 23474765

Neighbor

gene id symbol gene type direction distance location
LOC110501997 LOC106582152 coding downstream 12056 23368423 ~ 23460589 (-)
LOC110502015 renr coding downstream 109239 23354928 ~ 23363406 (-)
LOC110502000 LOC106582153 coding downstream 120924 23333596 ~ 23351721 (-)
LOC110502001 LOC106582154 coding downstream 145513 23298314 ~ 23327132 (-)
LOC110502006 LOC106582004 coding downstream 236957 23197766 ~ 23235688 (-)
si:dkey-100n23.5 LOC106582150 coding upstream 2173 23476938 ~ 23578992 (-)
LOC110502029 g12 coding upstream 108682 23583447 ~ 23585473 (-)
LOC110502021 LOC106582149 coding upstream 132665 23607430 ~ 23618048 (-)
LOC110502018 LOC106582148 coding upstream 263841 23738606 ~ 23763120 (-)
LOC110502024 LOC106582147 coding upstream 301299 23776064 ~ 23788613 (-)
G1790992 NA non-coding downstream 135 23472260 ~ 23472510 (-)
G1790990 NA non-coding downstream 1234 23471084 ~ 23471411 (-)
G1790989 NA non-coding downstream 2050 23470373 ~ 23470595 (-)
G1790983 NA non-coding downstream 6240 23466137 ~ 23466405 (-)
G1790982 NA non-coding downstream 6886 23465387 ~ 23465759 (-)
G1790932 NA non-coding upstream 71 23474836 ~ 23476010 (-)
G1791013 NA non-coding upstream 29021 23503786 ~ 23567779 (-)
G1791027 NA non-coding upstream 59824 23534589 ~ 23535166 (-)
G1791047 NA non-coding upstream 120357 23595122 ~ 23595338 (-)
G1791063 NA non-coding upstream 145815 23620580 ~ 23620880 (-)
G1790280 NA other downstream 303282 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1053147 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 1651700 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3016662 20390516 ~ 20455983 (-)
G1791405 NA other upstream 851964 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 1373826 24848591 ~ 24849752 (-)
G1792345 NA other upstream 1382059 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1511194 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 2235808 25709599 ~ 25744218 (-)

Expression


Co-expression Network