G1791153 (LOC106582143)


Basic Information

Item Value
gene id G1791153
gene name LOC106582143
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23840892 ~ 23868836 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2050152
atgtttgtatgcggctttattaactcaatgatacatatctttttttacattgtttgcaaactgatgtgaCCCGTATTAATGcaagccccccaaaaaatgttttttctaAAAATGTGGGTCTCAaaagccccacctgccctgaatgacgggtcggcACTGGCCACTGTTATCATACAGTTTGGTGTAGTCACTTAGCTGTTGTTGTCAGAACAGAATAATTAATGCCGTGGTCTTCCAACATGACCGCCAGGAGGCATCGTTTACATGAAAACTAATAATTTTGTCTAACATAAAACCAAATGGTTTGAATCCTCAGCATGATTCAAATGGTTCAGCAAAGTAGTCACTTCCTACTGCAGCTTCCTTTGAATGTGACCAGTGACATTATAAGGGGTTTTAATAGGACAGTAGGGGCTCCCCCATACCAGTTTGGCATTTACAGAGGGAAATCTTGTttagaccagacagatctacatTAGACCAACACCAGGAACATGCAGTATACAGCGACAGATCATGGGCATTTTTACAGTATTCTCTTTGTAcatcaagtcagaaccgtagaaTAAATAATGGGGCcaaataagcagacaatgaatgcTCTTATAATATtctatgattacatttctctaaaacaggctatagactacatgtgcaccaccaagtcagaacagtaggcgaaagagggaaaaagggaccaaattattaacGTGAGGCACATGGggtactaacagcttactacacaccacacatagtattacatagctacagtataactccctggcatattacatcatttatgcatcAGTATAAAGTATCACCTGGTTGTGCTCACTTCcttacaaaccactcattgttgaatttgcaatttccaacttgttgtgtaatgtttacgtCCAATGGCCGACGAGCATATATCTGGAACAgaggagtgatgattgctgataatgggcctctgtacacctatgtagatattccataaaaaatctgccttttccagctacaatagccatttacaacattaacaatgtctatactgtatttctttaaaaacaaggatatttataagtgaccccaaacgtttgaacaaaagtgtttttattttattttttatattgtttgcaaactgatatgtgacccgtattaatgccaaaataacatgcaaaacaggcaagccccgcCAAAAATGTTTTTTCTAAAAATGTGGGTCTCAaaagccccacctgccctgaatgacgggtcggcACTGGCCACTGTTATCATACAGTTTGGTGTAGTCACTTGGCTGTTGTTGTCAGAACAGAATAATTAATGCCGTGGTCTTCCAACATGACCGCCAGGAGGCATCGTACGTCAAGCCCTCTATAGGCTATGCAAAGCCTTGGTCGGGTCCATTCGAGTCCACTCAGGTCTATCATCTGTGCTTACTGTACATAGACCTGACACCTGATAACAATCAAACAGGACACGACCCAGACCAGAACAAAAATATTTCATTTCAGACCCGGTCTCAAGTCAGGTCTGGAGTATTCAGGTGGACCTGTGAAGACCTTTAAACTGGAGTAACCAGATAATTTGCTTGACATTTGTAAATTGAATAATCCTTGACATTAGTCATCCCATGACATGGTCTCTAAGTTCACAGCAAGCTACATAACAATAAGCAATTAACATGTCCAATTCTTCACAATTCTAAGTAAAACAACGTCATTGACTATTTACATGAAAACTAATCATTTGGTCTAACATAAAACCAAATGGTTTGAATCCTCAGCATGATTCAAATGGTTCAGCAAAGTAGTCACTTCCTACTGCAGCTTCCTTATAATGTGACCAGTGACATTATAAGGGGTTTTAAAAGCACAGTAGGGGCTCCCCCATTCCAGTTTGACATTAAACACAGGGGTATCTTGTTTAGAGCAGACATATCTACATTAGACCAACACCAGGAACATGCAGTATACAAAATGCATAAAGACAACGATGGCTGTTCAGTCATGTAACAGCTGTTACTCTTCTTAGAAATATGAAAGCACCTGTACTTTAAGAAGTGAGTAAACTCTACAATTGCAATACACAGGCtccctttttgggggggggcttcATTCACTGAGTCTAGCTCACATTCGGTCCATTGACCACAGTCATTTCTCCTATCATGctgttcttctcttctcttttagTTCCTAAACCTTGtctccatggccacattttgtaCTCTGCTCTCGTCATCATATTCGTAACTCAGGGTTCAGTTCAGTGTCATCGAACTAGGGAAAACCATGATTAACCACTTTCAGGTGCCGTTTGCCTCTTTGCATAAAACCCAAAGAATAGTTCAGACATGACGGCACAACACATTGCTCAATGTTGCTCCAAGTTCTACATTGAACACAGGCCTTATTTTAACTTTCAGTTCCTCTTATCATCATCCCTCCATTTTGTTGTCTGCCAGTTGAAGAGAGATTGTTGCATCAGAGGGGGGAGACTCTTCACACATTCAGGCAGAGTCATCTTCATACACATTAAACGACTGGGTCACGCCTCTTTcctgcctctctgtgtctctCGTTGACCTTTCATGTCGGCGACATCTAGTTAGTAAGAACACCAGCAGGACTCCCACAATAAAAATCACAATCAGGCTGACAGCCACAACTGCTGCAACCTGTACTTTATAATGTATGCTACCTTCCATGGGcaTATGATTTTGATTGCAGCTGGAGTTGGAGTTGAGGTTGGAGGCCAAGGCTGTGTTCTCCACCACACATTGCAGTGTTTCACCCTCACTCAGCTCGATGGTCAGGTTGCTGGTCAGGCTGTAGAGTCCTGTAATGTTGTCCAGGTGGGTCACATCCCTCCTGGAGGGGTTCACCAGAGGATGTCCTTCCAGCTCCCAGTGAATCTGGCCCTCTGGATAGCCCCCAGAGGCTTTACACTGGTACACCCTCGACCCCTCTCCCCCTCCGGAACTCACCGAAGCCTGGTCTGAGACGAGGTCCATACAGACACTGTAGCTcgCAGCCACATGTAGAATTACTTGTTCGTAGACAAAAGCGTCGGCTGTAAAGGAGCATTTGTATGTCCCGTGGTCTGCCACAGTGATGCCTGAGAGGAGCAGCGAACAGTTGTCCTTCTCTTCATTTAGAAAGAGACTGGCCCTGTTTTCATATCTCGTCCCTATGGTTGTGTGGTTATTACTTCCATCATGACGGAGCACGATGGTATGCTCTTCTAGCTGCCAGATAATTGTCTTTCTCACATTTCTATTTACGCAGGGGCAATGCAGGAGGACCTTCTGTGTCACAATTCCTTTCACACCTGAGAGGGCCGAGGCAGAGATGAAGACTGCTGCTAATCCCAGGACAGTCCACATGACAAAGTGTGTTCTGTATGTTTCCATTTCCTCCAGACGAGATCAAAGTTGTGTGTGTATCCCAGTTGAACGACACACGTGGAATGCATATAAGTCACGAGTGTCGGTTGTCggttattttttatatatagatTGACGTCAAGCTTCCGCAAAGAAAGATTGCGACAACAGCATTAAAGTAGCCTACATAATATTGACTTGCACCGTCACTGGTGGGAAAGCCAAATGTGTGTTCACAGGACAGTTAACGCTCGTGCGAGCCTGAGTTCAAGGCAATGGGATTATtgggatttcaaatcaaattgtattggtcacatgcatgcGGATGTTGCAAAATGCTTGTTTGAATGAATTTGCTCGGGAAATGTAAGGTTATGAACCCTAGGCATAGGCCCTATCGACTGGTAAAACTGTGTAATAACCTACATCAGCTTCAATGACC

Function

NR:

description
CD276 antigen-like isoform X2

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2050152 True 3818 lncRNA 0.43 6 23840892 23868836

Neighbor

gene id symbol gene type direction distance location
appb LOC106582144 coding downstream 5245 23803577 ~ 23835647 (-)
LOC110502024 LOC106582147 coding downstream 52279 23776064 ~ 23788613 (-)
LOC110502018 LOC106582148 coding downstream 77772 23738606 ~ 23763120 (-)
LOC110502021 LOC106582149 coding downstream 222844 23607430 ~ 23618048 (-)
LOC110502029 g12 coding downstream 255419 23583447 ~ 23585473 (-)
LOC110502014 LOC106582141 coding upstream 65024 23933860 ~ 23938722 (-)
LOC110502070 NA coding upstream 83739 23951016 ~ 24038256 (-)
LOC110502010 LOC106582139 coding upstream 153551 24022387 ~ 24050582 (-)
LOC110502071 LOC106582043 coding upstream 184426 24053262 ~ 24072305 (-)
LOC110502032 NA coding upstream 213260 24082096 ~ 24085731 (-)
G1791155 NA non-coding downstream 324 23822379 ~ 23840568 (-)
G1791091 NA non-coding downstream 38850 23799990 ~ 23802042 (-)
G1791104 NA non-coding downstream 162432 23678164 ~ 23678460 (-)
G1791084 NA non-coding downstream 184393 23656271 ~ 23656499 (-)
G1791206 NA non-coding upstream 60886 23929722 ~ 23930005 (-)
G1791207 NA non-coding upstream 61768 23930604 ~ 23947305 (-)
G1791293 NA non-coding upstream 166702 24035538 ~ 24036176 (-)
G1791296 NA non-coding upstream 182464 24051300 ~ 24051562 (-)
LOC110501997 LOC106582152 other downstream 380532 23368423 ~ 23460589 (-)
G1790280 NA other downstream 671529 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1421394 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2019947 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3384909 20390516 ~ 20455983 (-)
G1791405 NA other upstream 457893 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 979755 24848591 ~ 24849752 (-)
G1792345 NA other upstream 987988 24856824 ~ 24857885 (-)
G1792433 NA other upstream 1117123 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1841737 25709599 ~ 25744218 (-)

Expression


Co-expression Network