G1790709


Basic Information

Item Value
gene id G1790709
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 23930575 ~ 23947727 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2049665
ctcacagcccttacttctgtcaagacgtgctttaagtggtccgtttccgcccagggagcttttgatctcctcaagaatcgttttacatccgcacctatccttgttacacctgatgtcactagacagttcgttgtcgaggttgacgcgtcagaggtgggcgtgggagccattctttctcagcgctccctctctgacgacaaggtccacccttgcgcgtatttttctcatcgcctgtcgccgtcggaacgtaactatgatgtgggaaaccgcgaactgctcgccatccgcttagccctaggcgaatggcgacagtggttggagggggcgaccgttccttttgtcgtttggactgaccataggaaccttgagtacatccgttctgccaaacgacttaatgcgcgtcaggcgcactgggcgctgtttttcgctcgtttcgagttcgtgatttcttatcgtccgggctctaagaacaccaagcctgatgctttatctcgtctcttcagttcttcagtagcctccactgaccccgaggggattctccctgaggggcgtgttgtcgggttgactgtctggggaattgagaggcaggtaaaacaagcgctcactcacactccgtcgccgcgcgcttgtcctaggaaccttcttttcgttcccgttcctactcgtctggccgttcttcagtgggctcactctgccaagttagccggccaccctggcgttcggggtacgcttgcttccattcgccagcgtttttggtggcccacccgggagcatgacacgcgtcgtttcgtggctgcttgttcggtctgcgcgcagactaagtccggtaactcccctcctgccggccgtctcaggccgcttcctattccctctcgaccgtggtctcacatcgccttagattttgtcaccggactgccttcgtcagcggggaagactgttattcttacggttgtcgataggttctctaaggcggctcatttcattccccttgctaagcttccttctgctaaagagacggcacaaatcatcatcgagaatgttttcagaattcatggccttccgtcagacgtcgtttcggacagaggtccgcaattcacgtctcaattttggagggagttttgccgtttgattggggcttccgtcagtctctcttccggctttcacccccagtctaacggtcaagcagaacgggccaatcagactattggtcgcatcttacgcagtctttcttttcgtaaccctgcgtcttggtcagaacagctcccctgggcagaatacgcccacaactcgcttccttcgtctgcgaccgggctatctccttttcagagtagcctcgggtaccagcctccgctgttctcatctcagttcgccgagtccagcgtcccctccgctcaggcttttgtccaacgttgcgagcgcacctggaagagggtcaggtctgcactttgccgttataggacgcagactgtgagggctgctaataagcgtagaactaagagtcctagatattgtcg

Function

NR:

description
Retrotransposable element Tf2 protein type 1

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2049665 True 1514 lncRNA 0.55 2 23930575 23947727

Neighbor

gene id symbol gene type direction distance location
LOC110502009 LOC106582142 coding upstream 28592 23881233 ~ 23901983 (+)
LOC110502020 LOC106582143 coding upstream 61736 23840898 ~ 23868839 (+)
LOC110502012 LOC106582145 coding upstream 130628 23791644 ~ 23799947 (+)
LOC110502002 LOC100195685 coding upstream 216998 23699620 ~ 23713577 (+)
LOC110502031 NA coding upstream 295393 23633163 ~ 23635182 (+)
LOC110502003 LOC106582138 coding downstream 8436 23956163 ~ 24023376 (+)
LOC110502017 LOC106582137 coding downstream 137174 24084901 ~ 24118246 (+)
LOC110502026 ube2al coding downstream 178166 24125893 ~ 24137925 (+)
rab20 LOC106582135 coding downstream 200317 24148044 ~ 24157384 (+)
LOC110501999 LOC106586666 coding downstream 316604 24264331 ~ 24324757 (+)
G1790705 NA non-coding upstream 7381 23922965 ~ 23923194 (+)
G1790695 NA non-coding upstream 21609 23908760 ~ 23908966 (+)
G1790693 NA non-coding upstream 24847 23905418 ~ 23905728 (+)
G1790676 NA non-coding upstream 83546 23845665 ~ 23847029 (+)
G1790427 NA non-coding upstream 187381 23740562 ~ 23743194 (+)
G1790785 NA non-coding downstream 103153 24050880 ~ 24051163 (+)
G1790814 NA non-coding downstream 129811 24077538 ~ 24077768 (+)
G1790825 NA non-coding downstream 175087 24122814 ~ 24123198 (+)
G1790801 NA non-coding downstream 193045 24140772 ~ 24141197 (+)
G1790442 LOC106582152 other upstream 498192 23416093 ~ 23432383 (+)
G1788815 LOC100136012 other upstream 1930952 21998473 ~ 21999623 (+)
G1788811 LOC106581691 other upstream 1934482 21995364 ~ 21996093 (+)
G1787719 NA other upstream 2794098 21134265 ~ 21136477 (+)
G1786330 NA other upstream 3646004 20283181 ~ 20284571 (+)
G1790805 NA other downstream 170835 24118562 ~ 24119475 (+)
LOC110501605 LOC106582130 other downstream 446341 24394068 ~ 24423067 (+)
G1792040 NA other downstream 895215 24842942 ~ 24843285 (+)
LOC110501609 fam155a other downstream 901239 24848514 ~ 25013655 (+)
G1792649 NA other downstream 1346819 25294546 ~ 25296557 (+)

Expression


Co-expression Network