G1791242 (LOC106586666)


Basic Information

Item Value
gene id G1791242
gene name LOC106586666
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24319442 ~ 24324733 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2050266
TGATTTACACAGTATGGGGACTGGGAGGTGAGAAGAATAGTTGGCAAAACGTTTGGTCGGTTGGTTAATAATGAGCTAGGGACTACAACCAAGAACTCTCAAGCAAAATTTGCCACTGAACTCAAACGTATTCCTAAACAAGTGCTACTAAAATTGTATGTATGAATGAGCATTTTCTGAagaatcattaaaaaaaaaacattttgagttCAGTCTACTAATGATAAGAGCCTTTTACTTTCAGAATGCTTTGATTGGAGGAAACCTATGAATGATTGCCGGTTACAAGTAGTTTGTGAGGTTTGGATACTTTATTTCTTCAGTGTGTAAAGTATTTCTTTAGTACTCGACTAATTCTGGGCTTGGACAGGAGAGTCTTGGTTCTAGGGTTTTTGCGTTCACCCTCAGACAAAAGGGGGAGCAGCAGGGTAGGATTGATGTAGTAGATTAGGGACAAGTGCCAAACAGAGCAGTAGGGAATTTACATTTTAAAAGGGAGCTTGAAAAGTAGATTCAAAATACCCAGGAATCTGTAAAAGCACTTAGTCATAAATATATCCTTCTCTGTCTTTGACCAAAATGGAAAATCTAAATATATCTAGCTAATTATCACAGGAATAATATTGCAGGAGGCATGATCAAGTATATCAGAGTAAGAATAAGAGTACACATAGGTGTGCGTGTGTATACATGTCTTTCTTTGGGTTCTAGCATTTGATTAATAAGCTTCAACACACAAAATAATGTGAAGGACGTATTCAGGAAACGTACATCACACAGAACTATTGATGCACACAGAGTTGATTGAGTGGCCAAGTGAACTGACGAGTGTTTGACGACTCGCTGTCTTAAGGATTGCTCTGCACACAAACTACAAGCCATGAACTTCTTCTGTCAACAGGTCCGTGTGTGAAAACTCTTTCGGCTtgtgacaacacacacaccctctgcatACTACAGATGACAAGCTGTGTCAATGTTCCCCCTCGTACTGACAGGGTGTGGATGCGCGAGTGTGTGTGATGTGGGCGGCACCTTCATTGAAGAGGACAGGCtcgtagtaatggctggaacgtaatcaatggaatggtattgaACAGatgttttccatgtgtttgataccattccattaacaTGAATTATTATGAGaggtcctcccctcagcagccttatgtgatgtgtgtgatgcgctccaatgaaataacacactatcagtgatgctgccaccactatgttaCTGTTCTGCATACTGACAGATAAGGCACTGAAGGTGTTGGCCTATAGCGGCAGGTCTGATGTATGCTAACTGTAGCATGTAACATTAAACCCAGTATTAAAACTATAAGTGCCTAGGTCAGGTTGGAACAGAATACCATACTGTACTTTCTTTAGTGACATTGATTATGGTTCTTTGGCGACTCAAATCCACTCAAGCTTTACATTTactcaaataaatacaaattgaaATAACACAAATTAAAACGTAAATACCTGAAGAGATTATGGTGGCTGTTATTTTAGGAAGGAAAAAGAAAAGTCATATATTTACAACAGAACCATCGCGATGCATGCATGCTAGCAACCactagggctctattcaatctgcgtcgctgaagcgttacagattgcaTGATataaatgtaaaggtcatttccgattgagccgacgtATGCAGCGCTTACTGTGAATGCAGTATCTGCTAATGTGGGAACACTGGCTTTGAATTTTCAATCATGCTGTAACGATGAACTTCCGtgacagattgaatagagcccttcaCTTACAGTGATGTCTCAGCATGACAAGCATCTGTAACCAGTGGTAACTCCCATCCTTACATTAGTATTGTGTTATTACAAAAGTAAAAGTGAGGAACAATAACAATATATATAACTAACTCAGAGCTGAAAGTCAGTGGCATTGAGTGAAAATACAAAACATAATGTACTGGAATAAGGCAAGTAGATTAGATTCAATAGCACCTGACTTACACAAACACCCCCTTTCAAAATGGACGCCAGTTTACTAATGGGGAGGGGGGCGGGATGTACTCAGTGCAGTCGTAAACTGGGCGACATTCGCTAGAGAAACGTTGTGAAAATGTTAGTAAAGTGTTCTGCATGATGGAGCGTAGGGCCAGTTGATCTTATGGTTTGGTCTCTGGTGTGTCAGAGAAGGCTGGTAGGAGGAGCTATACGAGGAGTGACTCATTGCAATGGTtaaaatggaacggtatcaaacatataTGAAACACATATTTTACtccattccattattccattccaatgagcctgtcctcctatagctactcccaccagcctcctctgacagtgtgttttgtTCTTTCATCAATCTTTCtgggtgtttttttgttgttctgTTTCACAGTGTGTCTGCCTGTTCCTCTCACACACGCAGTGAAATAGCACCATCCTTTGGTCAATAACACGAAGTCATGCCCCGGACCGTCGGACTGGGTGGGGTCAGGGGTTGTGGTGGGTGGTTAAGGGTCACAGAGAGGTCAGGGGGTAGAGCCTATGTCCTCTTCATGCACACCTGGCAACGGCTAATGTTACTCCGGAGATTTCCTGCCTTTTGTGTGGTGGGCACAGGTTTCGTAAACATCTCCTCGTCCTCGATGGTGGCCAGCCAGAAGCTGTAGGAGTTGGCGTAGTAGTTGCAGGTTCCACGGCCGTGACACTCGATGAACGGAGCGCCACGGAACTCCTCTAGACAGGAGCCAGGAGATGCCAGTGCCTGTCCAGAGCCCTCAGCACCTGCACTAGTGtgCATGACGAAGGAGTAGCCAATCCAGAGTGAGTCCCAGCCATTGGGGCATGATGGGATCATGATGTTCTGACTGTGCACTGCTATCACCATGGCAGGAGCCTCACATACTGAACACCTGCTAATGAAGGGCTTGATGCTCTGGCCAGTGATAGGGGCCATGTTCATTGGCATGGGCTCAGGGGAGGTGAGCCAATAGGAGTAGTCGTTACGGGAGGCAAAGTTACAGACGTTGTTGATGTTACAGAAGAGGAAGGGCATGGGACTGAACTTCCTTAGACAGCTACCAGCCGTACCCAGGTCCTGGCCGTGGGAGCGCTCGTTGCCCTGGACGTAGAGTAGGGAATATCCATCATAGATCACCGACGTTCCCTCAGGACAATGTGGAACCTCCACCGATTGGCTGTGCCTGGTTACCAGGAAACCATGTTCCATGGAGGAGGGGCCAGGAGGACCCACCTGACCCGGAACACCATCAGGTCCTGGGGGTCCAGGGTACCCTCTGGGTCCTGAGGGACCAAGCAAGCCTGGTTCTCCCTTGGCGCCGGGGAGACCATTAAACCCTGGGTTCCCCTCATCACCTTTAATACCCTGAATACCTGTCACAcCTTGCTGTCCTTTCAGCCCAGGGATACCAGAGGGCCCCACAGGCCCCTGAGGGCCCTGATTACCAGGGAAGCCGCTGTCTCCCTTGATGAAGATGTGGGGGCCAGGAGGACCAGGGGGACCATCATTACCTTTGTCTCCTGGGAATCctctgtcccccagctctccTTTGAATCCAACCACTCCGAATTCACCCTTTGTCCCTGGGAAACCAGGCACTCCCTGCagtcccatctctcccttcagTCCATCAACACCTGGAAGGCCAGCTTGACCAGAAAGTCCAGGGTATCCTTGATCTCCTTTGATACCCTGCTCCCCATGTACTCCTGGTTCACCCTGGTCCCCTTTGTCTCCCTTCCCCCCCACGCTGCCTGGAACACCAGCAGGACCTGGAGCACCACTGGTACCTGGTTCTCCAGGCTTTCCTGACACTCCTTGGTCTCCTTTGGGCCCCGCCATGGCGGGTCCTGGGAGACCCCGTTCTCCTGGCTGGCCATGGGAACCCTCAAAGCCTGGAATACCCTTGTCTCCCCTGGTCCCTGGGATACCCGGGATACCTGGAGAGCCTGGGAAACCTGGAGAGCCTTTGTCACCTTTATCCCCAGACGACCCTGGTGTCCCTGAGAAGCCCCTGCCGGG

Function

NR:

description
collagen alpha-1(IV) chain-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2050266 True 4035 lncRNA 0.47 11 24319442 24324733

Neighbor

gene id symbol gene type direction distance location
LOC110501998 LOC106582131 coding downstream 55155 24157993 ~ 24264287 (-)
naxd LOC106582132 coding downstream 171456 24141838 ~ 24147986 (-)
LOC110502019 LOC106582134 coding downstream 177845 24138664 ~ 24141597 (-)
LOC110502032 NA coding downstream 233711 24082096 ~ 24085731 (-)
LOC110502071 LOC106582043 coding downstream 247137 24053262 ~ 24072305 (-)
LOC110502073 myo16 coding upstream 194841 24519574 ~ 24755850 (-)
tnfsf13b tnfsf13b coding upstream 449985 24774718 ~ 24778935 (-)
LOC110501608 LOC106582128 coding upstream 454672 24779405 ~ 24785002 (-)
LOC110501610 LOC106582126 coding upstream 774708 25099441 ~ 25149856 (-)
LOC110501612 LOC107389858 coding upstream 838456 25163189 ~ 25176805 (-)
G1791344 NA non-coding downstream 101072 24217867 ~ 24218370 (-)
G1791249 ube2al non-coding downstream 181239 24129108 ~ 24138203 (-)
G1791303 NA non-coding downstream 243869 24075351 ~ 24075573 (-)
G1791301 NA non-coding downstream 245391 24073803 ~ 24074051 (-)
G1791297 NA non-coding downstream 267614 24051613 ~ 24051828 (-)
G1791474 NA non-coding upstream 44904 24369637 ~ 24370091 (-)
G1791788 NA non-coding upstream 124462 24449195 ~ 24449517 (-)
G1791855 NA non-coding upstream 236590 24561323 ~ 24561523 (-)
G1792026 NA non-coding upstream 507531 24832264 ~ 24832586 (-)
LOC110501997 LOC106582152 other downstream 859082 23368423 ~ 23460589 (-)
G1790280 NA other downstream 1150079 23164481 ~ 23169363 (-)
G1789581 NA other downstream 1899944 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 2498497 21788428 ~ 21913721 (-)
G1787166 NA other downstream 3863459 20390516 ~ 20455983 (-)
G1791405 NA other upstream 1996 24326729 ~ 24327127 (-)
G1792342 LOC106582127 other upstream 523858 24848591 ~ 24849752 (-)
G1792345 NA other upstream 532091 24856824 ~ 24857885 (-)
G1792433 NA other upstream 661226 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 1385840 25709599 ~ 25744218 (-)

Expression


Co-expression Network