G1792342 (LOC106582127)


Basic Information

Item Value
gene id G1792342
gene name LOC106582127
gene type unknown
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 24848591 ~ 24849752 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051421
GAGTATTCATCAGTCTCATATTTCTCAACCAACAGCTCAAACTCCCGGTAGTCCTCCTGAGCTTGCCGGTCAAAGCGCTGGTAAACCCGGACACACTCGCTGCATCCCAGCGTGTCACCCTCAGCCACGTCCAGGCTGCAGTTTATATTGTCCGGACTTGTAAACccgttaaacaaatccaaaagagAGTAGGAATTACAAAAAGAAAGATACAAATCGCTCAGATTCAAGTCCGCCGACTGCGTCCTCTCCCCGCCCCGGGAGAGGCCCAGGCAGACGGGCTCTGCGTCCGTGAAAGTGAAGCAGTCTTTGGACAAGCTGTCCGGGTGACAGGTGTCCAGTCGCCACAGAGGTTTGGTAGAATTCCCTATAAAAATAACATCTGGCTTTCTGGCAAGGGGGCCGTGGGGGGAATGGGGGTCAGAGGAGGGGGTGTGGTGGTGAGTGGAGTTTGGGTACTCGACCATGTCCGTAAAGGCGAGCCGCTTGTCCTGCCGCTTGTCTCGGGTCCGCGTCAGTTTGGCCTCGGCGCAGAACCACAAGTGATCAGAGAGCAGGACGGTGATGAAGAGAAGAGAGGCCAGCGATAGGCGCCATCTCTGGGCCCGCTCCGACTCGGTAAATGGCTTCTCGTTCTCTCGGGGTGCAAACCAGATTTTTAAGCCGTCATCTTGCTTCCGACACATCCAAGCACCCCTGGTCATATTTTAGGAAAAGCGCAGCTCTGGCCGACTCCACCGCGGGGGCTCCTCTGCCACTATACTCATTGACTTTGGGAGATGGACTCTGGTTATTTATCCTCGGTAACGGTGGGCTGCCGTGCCGCCGCCGGTCCTGGGCTCTCCTCTCTCGCGCCAGACGCCGTCGGTGTGTTATTCCGATCCAATTAGCGCGCCCGCACAGATTAAGCCTCGCGCTGCCGCATCCCCGTTCTCCATGGCTCTCCGGGGGGAAACCACGTTCTCTGTAACCGCATGCCTCGcgcctcgctccctctcttctgctctccGGGGTGGTGCTCGCGCGCAGAGAGACCAGCTGTGGCCAGTTTATCAGTGCTGTTGCCGTTACTGCTGCAGTTTCCCGGATTCAATTATGAGAAAGCAAAAGCCGTTTGATTGTGCCCCAGTTGATTTTTTCCGGTTCGTATCTGGGTTGAATG

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051421 True 1162 TUCP 0.56 1 24848591 24849752

Neighbor

gene id symbol gene type direction distance location
LOC110501608 LOC106582128 coding downstream 63589 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 69656 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 92741 24519574 ~ 24755850 (-)
LOC110501998 LOC106582131 coding downstream 584304 24157993 ~ 24264287 (-)
naxd LOC106582132 coding downstream 700605 24141838 ~ 24147986 (-)
LOC110501610 LOC106582126 coding upstream 249689 25099441 ~ 25149856 (-)
LOC110501612 LOC107389858 coding upstream 313437 25163189 ~ 25176805 (-)
LOC118943630 NA coding upstream 381509 25231261 ~ 25234195 (-)
LOC110501615 LOC106582053 coding upstream 424116 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 452067 25299369 ~ 25311767 (-)
G1792041 LOC107663003 non-coding downstream 5327 24843047 ~ 24843264 (-)
G1792037 NA non-coding downstream 8803 24839223 ~ 24839788 (-)
G1792026 NA non-coding downstream 16005 24832264 ~ 24832586 (-)
G1791855 NA non-coding downstream 287068 24561323 ~ 24561523 (-)
G1792347 NA non-coding upstream 11345 24861097 ~ 24861333 (-)
G1792354 NA non-coding upstream 26029 24875781 ~ 24876036 (-)
G1792398 NA non-coding upstream 86676 24936428 ~ 24936848 (-)
G1792400 NA non-coding upstream 88515 24938267 ~ 24938507 (-)
G1792402 NA non-coding upstream 91225 24940977 ~ 24941187 (-)
G1791405 NA other downstream 521464 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1388231 23368423 ~ 23460589 (-)
G1790280 NA other downstream 1679228 23164481 ~ 23169363 (-)
G1789581 NA other downstream 2429093 22418130 ~ 22419498 (-)
LOC110501594 LOC106581696 other downstream 3027646 21788428 ~ 21913721 (-)
G1792345 NA other upstream 7072 24856824 ~ 24857885 (-)
G1792433 NA other upstream 136207 24985959 ~ 24986268 (-)
LOC110501627 LOC106582113 other upstream 860821 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2418910 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2891620 27741372 ~ 27770708 (-)

Expression


Co-expression Network