G1792509


Basic Information

Item Value
gene id G1792509
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25092268 ~ 25094151 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051601
AATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATACAATTTCGAaacttggttgtgcatcagcattttttttcttgttatgtcagtcactgacagtctagtgactataaaaaaaatataacatttttgtAGCCTGACGGCCATCAGCTAAccttttttagattggtaaatcagtctagccagctatctaaacttgtagacctccagggggcccccattgattttccCTCAccctca
>TU2051602
GGGGCTgcttgtgtgtgcatgcttgtgtgtctctatgtgtgtatGACTGCTGTGTAAGTAGCCTGCTCTGTATGAGCGTGTTTCATACCAGTGAGACGCTGTGACTCTCACGGCCAGACATGTGGTCGTGGTTGTGTTTTTCTGCTGCTGTGCTGcagtgcatgtgtttgtgttgctCTGCAGCGGTAAAGGGCCCTGGATGTTTACATACGCTTCAGAGTGTCTCGTTTTCCGTTCTGGCTTAGGCTACACAGCTCTCTGTTGGGAGAGGCCCaacctgctctgcctctctctttctcctgtgccAGCACTGATATATAGCTATTATGATTGTTGTTACAGCTACTGCCCGATGTTTCTGACTTGGCAGAGACACAGAAGATGCGCTATCGCTCCACTTGAGGTTTGTCTGGTTTGCATGTAGGCTTTTGCAGATGTTCtaaatgtatgtgtgtttttctgtgtgcatgtgtgcgtgcaggGCCGGCCCTAGGCGTAAGCAACATAAGCGATCGCTTAGGGTCCCCGGCCTCTAGGGGCCTCGACCTAAAACATTTTTAGGAAATCTGTCTGGATCTCAACTTACTGTCGTAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATAGTAATAGTAGAATAGTAATGTAGAATAGTAATGTAGAATAGTAATAGTAGAATACAATTTCGAaacttggttgtgcatcagcattttttttcttgttatgtcagtcactgacagtctagtgactataaaaaaaatataacatttttgtAGCCTGACGGCCATCAGCTAAccttttttagattggtaaatcagtctagccagctatctaaacttgtagacctccagggggcccccattgattttccCTCAccctca

Function

GO: NA

KEGG:

id description

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051601 False 571 lncRNA 0.28 2 25092268 25093244
TU2051602 True 1003 lncRNA 0.42 2 25092268 25094151

Neighbor

gene id symbol gene type direction distance location
LOC110501608 LOC106582128 coding downstream 307266 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 313333 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 336418 24519574 ~ 24755850 (-)
LOC110501998 LOC106582131 coding downstream 827981 24157993 ~ 24264287 (-)
naxd LOC106582132 coding downstream 944282 24141838 ~ 24147986 (-)
LOC110501610 LOC106582126 coding upstream 5290 25099441 ~ 25149856 (-)
LOC110501612 LOC107389858 coding upstream 69038 25163189 ~ 25176805 (-)
LOC118943630 NA coding upstream 137110 25231261 ~ 25234195 (-)
LOC110501615 LOC106582053 coding upstream 179717 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 207668 25299369 ~ 25311767 (-)
G1792462 NA non-coding downstream 56477 25035327 ~ 25035791 (-)
G1792448 NA non-coding downstream 78570 25011600 ~ 25013698 (-)
G1792446 NA non-coding downstream 88321 25003723 ~ 25003947 (-)
G1792429 NA non-coding downstream 115061 24976701 ~ 24977207 (-)
G1792428 NA non-coding downstream 115606 24976223 ~ 24976662 (-)
G1792471 NA non-coding upstream 1341 25095492 ~ 25096562 (-)
G1792514 NA non-coding upstream 11369 25105520 ~ 25105755 (-)
G1792530 NA non-coding upstream 35320 25129471 ~ 25130521 (-)
G1792531 NA non-coding upstream 41029 25135180 ~ 25135579 (-)
G1792433 NA other downstream 106000 24985959 ~ 24986268 (-)
G1792345 NA other downstream 234383 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 242516 24848591 ~ 24849752 (-)
G1791405 NA other downstream 765141 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1631908 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 616422 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2174511 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2647221 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2886513 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2915504 28009421 ~ 28019116 (-)

Expression


Co-expression Network