G1792271


Basic Information

Item Value
gene id G1792271
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25166450 ~ 25167906 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051345
ttggtcttttaccaaatagtgctatcttctgtatgccacccctatcttgtcacaacacaactgattggctgaaatgcatttaaagaaagaaattccacaaatgaacttttaacaaggcacacctgttcattgaaatgcattccaggtgactacccccatgaacactttttgggttaatacatgattccatatctgttatttcatagttactattttctatattgtagaataatagtgaagacatcaaaactatgaaatccaAAAAAGTATTAgacaagtcaaaatatattttagaatcttcaaaatagccatcctttgccttgatgacagctttgcacacaattggcattatctcaaccagcttcatgaggtagtcacctggaatgcatatatatatatatatatatatatgtgtgtgtgtgtgtgtgtggggggggaccTGCATGACTTTATGTGTGACAAAGAACATAATATGGGGGGAAATTCTTCAGGTACTGCATCTTGAACTCCTCTGAATGAATAATATTTACACACATTTTTGGGGCACTCAATTATTTTTAGAATATGGTAACACAGAAAACAGAGTATGCTTTGAACATAAATACTGTTTACTTAAGTACTTAAGTTGAACTCAATGATTTGGGACTCAGTTTTGGTGGCAACAACCCCAAGACTAGATGTGCAACTTGTTTCTGCTTTTCCAAGACTATCCAGTCCGTAGCACTTATGGCAAAGGGAGATCAATATCTTCCGGCAGAACCGTCAGATTCCATCAACAATGTTAAGAAATATTGTACAGCACACCTGTGGGTTGAATTTCTAGCTGCGTGGACCTGACCGGAGAACAATGAGCCCCGCACACAACACAGACCTCAATGCAACAAACTAGTGTGAACCGGATCGAAGCAGAGAGGTGGCCTTTTGGGGTGAAACGTGTTCACCCTTCCCCAAGTTAAGTAGCCTGCACCTCTCTCATTTAATCCGCAGCCATCGACAATCCTCAAATTCTATTTAGCCATTGGATTGAAAGACAAGTCATTGTGAATTACAGCTGTTTTTCTGGCTGAACACTACCAGTGTCTCCCCCACTGGCTTTTGCTCCAAATACTTTGAATACCTTCACTATTGTGAATAGGCATTGTCCTCTAAAAGATCCCCAATAACACTAACCTTGCATCACCTTATCAAATTTGGTTGATTTTACCATTGAGTTGTGTGAATTTATTATGCATTATTGTTTGTTTTTGCTTTGGTATTAGTATTTTGATGTATCAGTCTGATGTATCAGTCACTTTCTGTTTCATGCTGGTTCTCACAACTGGTCTTATAGGCAGTTCCAGGAACAGAATGACAGCAATCCATCTAGCTACAGAAATAAAGTCACGGCCAGTAGACTAGCTAAATATCCTTTTCCAAatgttttttgtcactggcctacacaccccataatgtcaaag

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051345 True 1457 lncRNA 0.39 1 25166450 25167906

Neighbor

gene id symbol gene type direction distance location
LOC110501611 pdzd1 coding upstream 3611 25155097 ~ 25162839 (+)
LOC110501609 fam155a coding upstream 158057 24848514 ~ 25013655 (+)
LOC110501605 LOC106582130 coding upstream 743383 24394068 ~ 24423067 (+)
LOC110501999 LOC106586666 coding upstream 841693 24264331 ~ 24324757 (+)
rab20 LOC106582135 coding upstream 1009066 24148044 ~ 24157384 (+)
LOC110501614 ox2g coding downstream 25529 25193435 ~ 25223476 (+)
cfap91 maats1 coding downstream 157325 25325231 ~ 25333857 (+)
LOC118943581 NA coding downstream 233573 25401479 ~ 25407741 (+)
LOC110502118 LOC106582051 coding downstream 396762 25564668 ~ 25587687 (+)
LOC110501624 LOC106582115 coding downstream 451272 25619178 ~ 25651263 (+)
G1792265 NA non-coding upstream 16255 25149694 ~ 25150195 (+)
G1792260 NA non-coding upstream 23002 25143247 ~ 25143448 (+)
G1792252 NA non-coding upstream 33122 25133020 ~ 25133328 (+)
G1792240 LOC106582126 non-coding upstream 52552 25113664 ~ 25113898 (+)
G1792236 NA non-coding upstream 56628 25109555 ~ 25109822 (+)
G1792280 NA non-coding downstream 6959 25174865 ~ 25175168 (+)
G1792284 NA non-coding downstream 12863 25180769 ~ 25180969 (+)
G1792289 NA non-coding downstream 17672 25185578 ~ 25185861 (+)
G1792290 NA non-coding downstream 19098 25187004 ~ 25187208 (+)
G1792294 NA non-coding downstream 23640 25191546 ~ 25191786 (+)
G1792040 NA other upstream 323165 24842942 ~ 24843285 (+)
G1790805 NA other upstream 1046975 24118562 ~ 24119475 (+)
G1790442 LOC106582152 other upstream 1734067 23416093 ~ 23432383 (+)
G1792649 NA other downstream 126640 25294546 ~ 25296557 (+)
G1793045 NA other downstream 563420 25731326 ~ 25731754 (+)
G1793717 NA other downstream 1147920 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2735676 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2869022 28036917 ~ 28052019 (+)

Expression


Co-expression Network