G1792525


Basic Information

Item Value
gene id G1792525
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25221865 ~ 25265798 (-)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051618
CATGACATCATACATTTCCAAGCAACAGCATCTTCCTTCATACGGGGGGAGCTGTGTTCACCTTTAATGTGGTTAGTTGCATTTCTGCATGTGAAGTGACTGACATTATGAAAAGCATGTTACCTGGTAGGACAGCCCTCCACACACATATTCAATGCTTACATCCCAGATCACAGCAGTCAATGTATGGAGTAGAAATAAACATCCGAACTAGTAGTGATGTGTATGACGATTCAGAGAAATACCAGACGATGCAATATGATAGCAAACCATGACAGTTTTCTCCTAAAAAGCAAATTAACCTTGACTGCTTCATGTCCTACGCTTATACAAGTTAATAAAATAAGGTCAGTATTTCATGAAGCTTGAATCTGCAGAGACCTAATAATACTGATGACctggccactttaaaatgtgttgGTGGCTGGGATTCAGAAGGAAagccccccctccacacacacattttatttttatacacCCCCTAGCAGTACTGGCAGCCATAACCAGCCATAATGAATTCCTCAGAAGGCACCCACAGAATCTCACCATTGCGTATTCTACTAAACATCACATCAAAACATCTGACCATTGAATCTGAAAACAGATTGCTGtcccaaatttcttgttaacaaactataattctggcaagtcggttaggacatctactttgtgcatgacacaaagtaattattccaacaattgtttacagattatttcacttacaattcactgtatcacaattccagtggttcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaactatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattagaggtgtacccgtggatgcatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcaggcaagacctcagaaaaataactgtagacctccacaagtctggtttgtttttgggagcaatttccaaacgcatgtgggcaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaacgctcagccgtcataccactcaggaaggagacgcgttctgtctcctagagattaatgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccctgtgaaaaTGCTGAagcaaacaggtacaaaagtatctatatccacagtaaaacgagtcctataaatcaacataacctgaaacgcaactcagcaaggaagaagccactgctccaaaaccgccataaaaaaaccagactacggtttgcaactgcacatggggaaaaatatcaaactttttagagaaatgtcctctggtctggtgaaacaaaaacagaactgtttggccataatgaccatagttatgttcGGGGGGAAAAGGGGAGGCTTACAAcccggagaacaccatcccaaaatgatgtggatatattgaagcaacatctcaagaaagtttggtcgcaaatgggtcttcaaaatggacagtgatcccaagcatacttccaagttgtggcaaaatgacttaaggacaacaaattaaaggtattggagtgtcccctcgccccgacctgggcgcgaaccagggacgctctgcacacatcaacagtcaccatcGAAGCATCGTtgcccatcgctccacaaaagccacggcccttgcagagcaaggtgaaccactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgccactagcgcgcaTCACCCACCGCTAACCAGCTAgcaatttcacatcggctacatgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagcttggtcatgaggaatgggtcaaaatgctccctacttattgtgggaagcttgtggaaggctaccctaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgaaagTAAACTTccgatccactgggaatgtgatgaaagaaataaaaagctgaaataaatctctttacaattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggaattttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttttgacttcaactgtaggttcctgcctttctagggagtttttctaaGCTACAGTACTTCTACATCAACATTGCTTGCGTTTtcaggttttaggctgggtttctgtatagtactttgtgacatcggctgatgtgaaaggggctttataaatcaatttgattgattgatctgaaaacacacacacgctgacatTCTTACTTATAACCACATTTATTCATCCTCAAATGGATATAAAATAATTTTATCTGACCATGGTCTACCACACACTCTCCAACCCTGCTACAGTTATGTGTAAGAGGTCTACAGTATGTCTGAGATttgggcccagattcacaaaacaaTCTTTAAAAGGAAATGTATTCTTAAGTGCAATTTTTTCTTCACTTTATActgaaaaaaattacaaaaagttGCTATTCCTCAATAAAGTTATTGAAAATGTTCTTAAGTTTCTTCCTAAGGAAATTGTTAAGAAATGTGATTCTTGAAAATAAAGTCACTGGATTTCTTCTTGGAAATGTTCTTAATTCCGAGATAGCTAAAGCCTGCTCTTAAATGGATGGAAGTGAGAAAATAAGATGAAAGCAATTGAACATGTTTACTTGACTCAAACTTCATCTGAAAGTTCCAGTATTGATTGTTTTTAAATCCCCCACCCCCAATTTTCTCTCCAGTTATCGCAGTAAGAAATATGCTAATAAGATTGCCCTTGCCGGCAAGATAGCGAGCTAGTTCAGTTGCTTAGCGACAATCATCTTAAAAAAGAAAGTTTGTAAAAGATATGAGACGTTCGTGAGAAAAGCATGAATCTTAAGGATTTGTACTAACAAACCAGTTTTTTTTCTTAAGAAGCTTCTTAAGTTTTGCgtttgaagtgttttgtgaatctgggccctgGGGTTGAAAGCTTACAGATAGCCTATGAGGCTATGATAAATTAAGAGTACATTAAGAGTAGAATCAAAATAAGGTGTTCTGGGGGATTCAAACAGGGTAGGTCTTCAACAGGAGCTGCGTTGCAGTGGTCTAAAGTGGGACATTAAAGTGTAAAATCCAACACAATAACTTTACTCATCTGCATTCAGTGTATCGTAAGACATTAGGATCACTGAATACTAAAATGTATTTTCACTTCATTCAGAGTTTTCCCACAACCTCGGTCCATTAGGTCGTGAAAACCACATTCATCTTGGGAACATACTTTAAAATGGCACAATGAAACCAAGGCAGTTACAAGAACAAAATACTTCATGATAGATATGGATAACAATTAGGGTTGCCGGAGGACAAGGTTAGGTTCAGATCTGTTCGGTTAGGATCTGTGGTGATCATACTGTCCAGTATTCACAAAATAGTCTGAGTGGGTGTGCAGATCTAGAATCAGGTCTCCTCAGTCAATATTATCTTATTCATTACGATCTAAAAGGGAAATCTGAATGCATATCAGCACTTCTATTCTGAAACACTTCAAACTCGTGTATACGAACCATTGTGACTAAACAAAAGATGTTGTGTTGATGGATTCAGTTTCTCAGTGACCCTGTGATGTTGGTCATGACAGATTGTATTCTGTGCCGTCTTGAGGTGGGACTTGCTTCACTTCTGAAAGTGCAGTAGAATGTTGAGGAACAGTTGCTGAGTGGCTGAGTTTCACTTCCTCCTTTTAGA
>TU2051619
CCCAGATCACAGCAATCAATGTAGAAATAAACATCCAAACAAGTAGTGATGTGTATGACGATTCAGAGAAATACCAGACGATGCAATATGACCATGACAGTTTTCTCCTAAAAAGCTAATCAACCTTGACTGCTTCATGTCCTACGCTTATAGTTAATAAAATAAGGTCAGTATTTCATGAAGCTTGAATCTGCAGAGACCTAATAATACTGATGACctggccactttaaaatgtgttgGTGGCTGGGATTCAGAAGGAAagccccccctccacacacacattttatttttatacacCCCCTAGCAGTACTGGCAGCCATAACCAGCCATAATGAATTCCTCAGAAGGCACCCACAGAATCTCACCATTGCGTATTCTACTAAACATCACATCAAAACATCTGACCATTGAATCTGAAAACAGATTGCTGtcccaaatttcttgttaacaaactataattctggcaagtcggttaggacatctactttgtgcatgacacaaagtaattattccaacaattgtttacagattatttcacttacaattcactgtatcacaattccagtggttcagaagtttacatacactaagttgactgtgcctttaaacagcttggaaaattccagaaaactatgtcatggctttagaagcttctgataggctaattgacatcatttgagtcaattagaggtgtacccgtggatgcatttcaaggcctaccttcaaactcagtgcctctttgcttgacatcatgggaaaatcaaaagaaatcaggcaagacctcagaaaaataactgtagacctccacaagtctggtttgtttttgggagcaatttccaaacgcatgtgggcaccacgttcatctgtacaaacaatagtacgcaagtataaacaccatgggaacgctcagccgtcataccactcaggaaggagacgcgttctgtctcctagagattaatgtactttggtgcgaaaagtgcaaatcaatcccagaacaacagcaaaggaccctgtgaaaaTGCTGAagcaaacaggtacaaaagtatctatatccacagtaaaacgagtcctataaatcaacataacctgaaacgcaactcagcaaggaagaagccactgctccaaaaccgccataaaaaaaccagactacggtttgcaactgcacatggggaaaaatatcaaactttttagagaaatgtcctctggtctggtgaaacaaaaacagaactgtttggccataatgaccatagttatgttcGGGGGGAAAAGGGGAGGCTTACAAcccggagaacaccatcccaaaatgatgtggatatattgaagcaacatctcaagaaagtttggtcgcaaatgggtcttcaaaatggacagtgatcccaagcatacttccaagttgtggcaaaatgacttaaggacaacaaattaaaggtattggagtgtcccctcgccccgacctgggcgcgaaccagggacgctctgcacacatcaacagtcaccatcGAAGCATCGTtgcccatcgctccacaaaagccacggcccttgcagagcaaggtgaaccactacttcaaggtctcagagcaagtgacgtcaccgattgaaacgccactagcgcgcaTCACCCACCGCTAACCAGCTAgcaatttcacatcggctacatgggcagaactgaaaaagcatgtgcgagcaaggaggcctacaaacctgactcagttacaccagcttggtcatgaggaatgggtcaaaatgctccctacttattgtgggaagcttgtggaaggctaccctaaatgtttgacccaagttaaacaatttaaaggcaatgctaccaaatactaattgaaagTAAACTTccgatccactgggaatgtgatgaaagaaataaaaagctgaaataaatctctttacaattattctgacatttcacattcttaaaataaagtggtgatcctaactgacctaaaacagggaattttactaggattaaatgtcaggaattgtgaaaaactgagtttaaatgtatttggctaaggtgtatgtaaacttttgacttcaactgtaggttcctgcctttctagggagtttttctaaGCTACAGTACTTCTACATCAACATTGCTTGCGTTTtcaggttttaggctgggtttctgtatagtactttgtgacatcggctgatgtgaaaggggctttataaatcaatttgattgattgatctgaaaacacacacacgctgacatTCTTACTTATAACCACATTTATTCATCCTCAAATGGATATAAAATAATTTTATCTGACCATGGTCTACCACACACTCTCCAACCCTGCTACAGTTATGTGTAAGAGGTCTACAGTATGTCTGAGATttgggcccagattcacaaaacaaTCTTTAAAAGGAAATGTATTCTTAAGTGCAATTTTTTCTTCACTTTATActgaaaaaaattacaaaaagttGCTATTCCTCAATAAAGTTATTGAAAATGTTCTTAAGTTTCTTCCTAAGGAAATTGTTAAGAAATGTGATTCTTGAAAATAAAGTCACTGGATTTCTTCTTGGAAATGTTCTTAATTCCGAGATAGCTAAAGCCTGCTCTTAAATGGATGGAAGTGAGAAAATAAGATGAAAGCAATTGAACATGTTTACTTGACTCAAACTTCATCTGAAAGTTCCAGTATTGATTGTTTTTAAATCCCCCACCCCCAATTTTCTCTCCAGTTATCGCAGTAAGAAATATGCTAATAAGATTGCCCTTGCCGGCAAGATAGCGAGCTAGTTCAGTTGCTTAGCGACAATCATCTTAAAAAAGAAAGTTTGTAAAAGATATGAGACGTTCGTGAGAAAAGCATGAATCTTAAGGATTTGTACTAACAAACCAGTTTTTTTTCTTAAGAAGCTTCTTAAGTTTTGCgtttgaagtgttttgtgaatctgggccctgGGGTTGAAAGCTTACAGATAGCCTATGAGGCTATGATAAATTAAGAGTACATTAAGAGTAGAATCAAAATAAGGTGTTCTGGGGGATTCAAACAGGGTAGGTCTTCAACAGGAGCTGCGTTGCAGTGGTCTAAAGTGGGACATTAAAGTGTAAAATCCAACACAATAACTTTACTCATCTGCATTCAGTGTATCGTAAGACATTAGGATCACTGAATACTAAAATGTATTTTCACTTCATTCAGAGTTTTCCCACAACCTCGGTCCATTAGGTCGTGAAAACCACATTCATCTTGGGAACATACTTTAAAATGGCACAATGAAACCAAGGCAGTTACAAGAACAAAATACTTCATGATAGATATGGATAACAATTAGGGTTGCCGGAGGACAAGGTTAGGTTCAGATCTGTTCGGTTAGGATCTGTGGTGATCATACTGTCCAGTATTCACAAAATAGTCTGAGTGGGTGTGCAGATCTAGAATCAGGTCTCCTCAGTCAATATTATCTTATTCATTACGATCTAAAAGGGAAATCTGAATGCATATCAGCACTTCTATTCTGAAACACTTCAAACTCGTGTATACGAACCATTGTGACTAAACAAAAGATGTTGTGTTGATGGATTCAGTTTCTCAGTGACCCTGTGATGTTGGTCATGACAGATTGTATTCTGTGCCGTCTTGAGGTGGGACTTGCTTCACTTCTGAAAGTGCAGTAGAATGTTGAGGAACAGTTGCTGAGTGGCTGAGTTTCACTTCCTCCTTTTAGA

Function

NR:

description
unnamed protein product

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051618 False 3890 lncRNA 0.40 2 25221865 25225823
TU2051619 True 3709 lncRNA 0.40 3 25221865 25265798

Neighbor

gene id symbol gene type direction distance location
LOC110501612 LOC107389858 coding downstream 45060 25163189 ~ 25176805 (-)
LOC110501610 LOC106582126 coding downstream 72009 25099441 ~ 25149856 (-)
LOC110501608 LOC106582128 coding downstream 436863 24779405 ~ 24785002 (-)
tnfsf13b tnfsf13b coding downstream 442930 24774718 ~ 24778935 (-)
LOC110502073 myo16 coding downstream 466015 24519574 ~ 24755850 (-)
LOC110501615 LOC106582053 coding upstream 8070 25273868 ~ 25278632 (-)
LOC110501616 LOC106582122 coding upstream 36021 25299369 ~ 25311767 (-)
gsk3ba LOC106586650 coding upstream 78878 25344651 ~ 25387478 (-)
LOC110501620 gpr156 coding upstream 123976 25389774 ~ 25416340 (-)
LOC110501621 gpr156 coding upstream 130252 25396050 ~ 25400976 (-)
G1792571 NA non-coding downstream 30504 25191157 ~ 25191361 (-)
G1792557 NA non-coding downstream 54213 25167423 ~ 25167652 (-)
G1792531 NA non-coding downstream 86286 25135180 ~ 25135579 (-)
G1792530 NA non-coding downstream 91344 25129471 ~ 25130521 (-)
G1792801 NA non-coding upstream 46018 25311816 ~ 25312063 (-)
G1793311 NA non-coding upstream 382703 25648501 ~ 25649291 (-)
G1793339 NA non-coding upstream 410265 25676063 ~ 25676470 (-)
G1792433 NA other downstream 235597 24985959 ~ 24986268 (-)
G1792345 NA other downstream 363980 24856824 ~ 24857885 (-)
G1792342 LOC106582127 other downstream 372113 24848591 ~ 24849752 (-)
G1791405 NA other downstream 894738 24326729 ~ 24327127 (-)
LOC110501997 LOC106582152 other downstream 1761505 23368423 ~ 23460589 (-)
LOC110501627 LOC106582113 other upstream 444775 25709599 ~ 25744218 (-)
G1794978 NA other upstream 2002864 27268662 ~ 27286095 (-)
LOC110501685 LOC106582064 other upstream 2475574 27741372 ~ 27770708 (-)
G1795850 NA other upstream 2714866 27980664 ~ 27981379 (-)
LOC110501691 LOC106582059 other upstream 2743857 28009421 ~ 28019116 (-)

Expression


Co-expression Network