G1792653


Basic Information

Item Value
gene id G1792653
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25303526 ~ 25306912 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051755
gacaGCCTTAACTGTATgctatgtatttactgtatagtTATATTGAATAGTGCTTGATTGACAACGCAAccacgctagcgtcccacctggccaacatccggtgaaattgcagagtgctaAAAGTACAGAAATaatcataataaacattcataaaatatacaagtgttatacatcggcttaaagatgaacttcttgttaatccagccgctgtgtcagatttcaaaaaggctttacggcgaaagcataccatgcaattatctgaagACAGCGCCCtgcttacaaaagcatacaaacattttccagCCAAGTAGATTAGTCGCAAAGGTTTGAAATATCaataaaatgaatcccttacctttgatgatcttcttatggttgcactcacaagactccatgttacacaataaatgtttgttttgttcggtaaagtccCTCCTTATATACAaaaaactcagttttgttggtgcgttttgttcagtaatccactggctcaatggcggtcacaacaggcagacgaatAAATCCAAATTGTACCAGTAAAGTTtgtcgaaacatgtcaaactatgtTTTTTATTAATCCTCAGCCtttcaatgtcaacaaaacaaaggagatgatcgtggacttcaggaaacagcagagggagcagccatCTATAttcattgacgggacagtagtggagagggtggatagTTTTAATTcctggacaaactgaaatggtccacccacacagacagcgtggtgaagcaggcgcagcagcgcctcttcaacctcaggaggctgaagaaattaggcttgtcaccaaaaacacttacaaacttttacagatgcacaattgagagcatcctgtcagctgtatcatcgcctggtacggtaactgcaccgcccacaaccgtaaggctctccagagggtagtgaggtctgcacaacgcatcaccggggacaaactactggcccttcaggacatctacaccacccgatgtatcaggaaggccaaaaagatcatcaaggacaacaaccccccgagccactgcctgttcaccccgctatcatccagaaggcgaggtcagtacaggtgcatcaaagcggggaccgagagactaaaaaacagcttctatctcaaggccatcagactgttaaacatccatcactaacattgagtggctgctgccaacatactgactcatctctagccactttaataatgaaaacatgtatgtaataaatatatcactagccactttaaacaatgccactttatataatgtttacataccctacattactcatttcttaaaactgcattgttggttaagggcttgtaaattagcatttcactataaggtctactgttgtattcggcgcatgtaacaaataacatttgatttgatttaaagaaaATCTAAAGAATAAATAGTTTCATCTGAGCAACTGGcttaatcctattctttaactattatttttggtttagttgggGACGTAAATCCAACATATAATTTGTTAACTTGTCAACAATttaataggctatttactgtattgcaaaagtgaattgtgtttggttgtcaacgcaacatTTGAggggtattcagaccccttgacttttttacacattttgttaggttacagccttattctacaattgattaattacaccataaagacaaagcaaaaatgtaAAATTTTTGCTCATttctaaaatttaaaaaatgaaatattcagtactttgttgaagctactttggcagcaattacagccctcaagtcttcttgggtatgacgctacaaaattggcacacctgtatttggggagtttttcccattcttctctgcagatcctctcaagctctgtcaagttggatgggaagtgttgctgcacagctattttcagatctttCCATAGatatttgatcgggttcaagtctgggctctggctgggccactcaaggacattcagagacttgtcccatagCCACTCCTGctttttcttggctgtgtgcttagggtctttgtcctgttggaaggtgaaacttcgccccagtctgaggtcctgagcgaaATGGGGCagattttcattaaggatctctctgtactttgctgcgttcatctttgccttgatcttgactagtctcccagtctctgccactgacaaacatccccacagcatgatgctgccaccaccatgcttcacagtagggatggtgccagggttcctccagatgtgatgcttggcattcaggccaaagagttcaatcttgctttcatcagaccagaaaatcttgtttctcatggtctgagagtccttaggtgccttttggcaaactccaagcatgctgtcatgtgcatttactgagaagtggcttctgtctggccattctactataaaggcctgattggttgagtgctgcagagatggttgtccttctggaaagttatctcatctccacaaaggaactctagagctctgtcagagtgaccattgggatcTTGGTCCCCTCccgtccctgaccaaggccctccctcccccgattgctcagtttggcctggctgccagctctaggaagtcttaggggttccaaacttcttccatttaagaatgatggaggccactgtcttcttggggactttcaatgctttagaaatgttttggtacccttccccagatctgtgcctcgacacaattctttctttgagctctacgggcaattcctttgacctcatggcttggtttctgtctgacattcactgtcaactgtgggacctcatatagacaggtatgtgcctttccaaatgatgtacaaacaattgaatttaccacaggtggactccaatcaagttgtagaaacatctcaaggatgatcaattgacaCAG

Function

NR:

description
TC1-like transposase

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051755 True 2866 lncRNA 0.42 2 25303526 25306912

Neighbor

gene id symbol gene type direction distance location
LOC110501614 ox2g coding upstream 80050 25193435 ~ 25223476 (+)
LOC110501611 pdzd1 coding upstream 140687 25155097 ~ 25162839 (+)
LOC110501609 fam155a coding upstream 295133 24848514 ~ 25013655 (+)
LOC110501605 LOC106582130 coding upstream 880459 24394068 ~ 24423067 (+)
LOC110501999 LOC106586666 coding upstream 978769 24264331 ~ 24324757 (+)
cfap91 maats1 coding downstream 18319 25325231 ~ 25333857 (+)
LOC118943581 NA coding downstream 94567 25401479 ~ 25407741 (+)
LOC110502118 LOC106582051 coding downstream 257756 25564668 ~ 25587687 (+)
LOC110501624 LOC106582115 coding downstream 312266 25619178 ~ 25651263 (+)
LOC110501626 LOC106582114 coding downstream 369125 25676037 ~ 25695731 (+)
G1792294 NA non-coding upstream 111740 25191546 ~ 25191786 (+)
G1792290 NA non-coding upstream 116318 25187004 ~ 25187208 (+)
G1792289 NA non-coding upstream 117665 25185578 ~ 25185861 (+)
G1792284 NA non-coding upstream 122557 25180769 ~ 25180969 (+)
G1792280 NA non-coding upstream 128358 25174865 ~ 25175168 (+)
G1792652 LOC106582122 non-coding downstream 1048 25307960 ~ 25309055 (+)
G1792647 NA non-coding downstream 37767 25344679 ~ 25361506 (+)
G1792712 NA non-coding downstream 91750 25398662 ~ 25446620 (+)
G1792728 NA non-coding downstream 117922 25424834 ~ 25434727 (+)
G1792726 NA non-coding downstream 118368 25425280 ~ 25427178 (+)
G1792649 NA other upstream 6969 25294546 ~ 25296557 (+)
G1792040 NA other upstream 460241 24842942 ~ 24843285 (+)
G1790805 NA other upstream 1184051 24118562 ~ 24119475 (+)
G1793045 NA other downstream 424414 25731326 ~ 25731754 (+)
G1793717 NA other downstream 1008914 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2596670 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2730016 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2784653 28091565 ~ 28092116 (+)

Expression


Co-expression Network