G1792712


Basic Information

Item Value
gene id G1792712
gene name NA
gene type non-coding
species rainbow trout (Oncorhynchus mykiss)
category of species economic fish

Chromosome Information

Item Value
chromosome id NC_048586.1
NCBI id CM023240.2
chromosome length 52474311
location 25398662 ~ 25446620 (+)
genome version USDA_OmykA_1.1_2020_rainbow_trout_Genome

Sequence

>TU2051830
AGGAGTTCACAAAGCTTTTATTGTGCTGTAGCCCAGAAGATTATTTGAGGACTTGCCCAAATAACAAAAGCCATTGAAAAAAGTATGCACATTTCAGAGTAtccacataaaaataaaaataaagtatcCACAAGTATCCACATAAATTAGATACAGAGACATATTGGGGCAGGATTAGTAATGAGCTGCATTTTCAGTATGTCATCATACAATCGTAAAGGACATCACAATACAGTCCAGCAAATGTGATTCTAGATTTCCTGGTAAGATACAATATATACCTCTCTAAATATTCAATATAAATCAATGCATGGAATGTTCAGTTTACTTTAGAATTTAATCGATACGAGTTAAATCTTAATCTGATTGGCTCACATGAGAGATGATCAACGGTGCTGACATTTTGTCAATGCCACAAACCCCAAGGTTGAAGTACGGGTAAAGTTTCTCAGTGAAGGAACAATCGGTAAATGAGTAGATATGAGACCTGGCCTGGGCATTGTAAAAGGAGACCTCACCATCTTCATAGTCCACATAGATCCCCACCTTCTGGGGCTTCTCACTCAGGGAGAGGGGGGTAGGGTCAGTGGTGCAGGCCCTGTAGACGTTCCCTTTCCCCTGCTGGATAGTCCAGAGTCCATTCTCAGGCTTTGCTACATGAATCGTTCTTTTAATGGACTCTCTGGCCACTCCTACACTCCAGAGAGTATTTCCCTTCACCTGCACCTCGTAGTAGAATCTTCCTGAGGAGTAGCCTTCCTTTCCCAGGATGCTGGCAATATAGAAGAATCTCTCTGGATTGCCAGGGTAGTTTTGTCGTCTACCGGGATGTCTAAGTTGTTTCACATCTTCAGAGAGAGTGAGATTGGGATGAGCTGTATCAGGGTCCAGAGTTACATCCACTGACCACTGCTGAATAACCTTGAGCTCAGCCTCACACAACCTCTTCAATTCACTCTTCAGTGTGTCTTCAAACTGAGAGCCAGCTCTCTTCACAGCTTTCCTCACCATGCCGACATTCTCAATACTCTGAACCCTGATCTCAGACCAGTCCTTGGTGGGTGGAGAGGTGCACAGGGATGGTGAGCTCTGGAGGAGTTTTAGGTCAGTGATTTCCTGCTCCAGCTCTTTAATGAGCCCTTCAGCCAGCCTTTTAGTTTCCTTTTGCTTTTCCGAAATCACCTGAATGAGTTCAGCCTGGCTTCTTTCAATGGAGCGCATTAAAGCTCTAAAGATCTGACAACTGTTCTCTACCTCTTGCTCTGCATTTATTCCGCTAGATTGTAGACTATTTCTGATCTCAATGACCTTCTGCTGTCTGCCCTGAATCATCTGCTGCACTTCAGCCTTTCCTAACTGTACATTATTCTTTCTGGTTTCCACTTTAAGAGGGAGAGTGTTGTGGCTGACAGCAAGGCTAATCCTTATAACTGATCTTTGATAAGCACAGGTATAGTGTTGTTGCTGGGTCCAGAGTAATGCTTTACCTGGAGGGGTTCGTACATCATTTCATCATCATAGTCATCATCAGGCTTTGGTTTCAGTTCTCTCCCTGCTGTACTCAGTTCAGCTTTGTGCTTGGTGCTTTCATTCTATATTCTACTTGGGGATTCACATCTAGATGACTATTGCTTCGATGTTTCTGAAACAAGCACCAGAGAGCACTGATTGAATACAGCACAGGAGCCATTGTGACCACATGATCTCCAACTCAAGCATATAACAAATTGTACATAGGAGCAAGTGTATTTGTCAAAAAGCAGGGCATACTAACTAAACGGGATGATTCACTAAGGCCTGAAACTATGCTGCTAGTCACAGAGGGGGAAGTGCATTGGTCAAGTAGTATCATGGCAGTTCTGTAAGCAAACAAGCTTAAAGTCAAGTGTATGACATCCCACTACCTTCCCCTACAATAGGACACTGTCATCGTCTTGCTCTACACTTCTAACACATCTTGAAGGACTTTCAAGATGATTTTGTTTCCTTGATGAAGAAAGTTGTCCCAACAGCTCACTCCTAACATCTCTCATCTTTCTCATTCCAAACAATTACTGCTTGCTATTTTACTAACAAGAGCCATACTGTCTCTATATTGTATACAtaggaagaagaagaaaactgTAACAGTAAAAAATGGCCCCATTCCTAGTGCAGGGTGCAGTAATACAATCACAAATAAAGACAGTACTTAACACAAGGAACTCCTAAAATAATACTCTAGACTGCCCTTGCATCTAACAAACATCAACAGAAAGACAGTAAAAAAGCTATAATAATTAACATATGAGTAAATTCAGCAACAGCACAGGGCCTCAAGGTACATCAAGTATAGAGGAAGAGTgactctctcgcactctctctcaaGCCCTTCTTCTTTGGGCTTCTTAGGCCTCCTTTGTGCTGACCTTCATCTTCTCCACTG

Function

NR:

description
E3 ubiquitin-protein ligase TRIM39-like

GO: NA

KEGG: NA

RNA

RNA id representative length rna type GC content exon number start site end site
TU2051830 True 2425 lncRNA 0.42 2 25398662 25446620

Neighbor

gene id symbol gene type direction distance location
cfap91 maats1 coding upstream 64805 25325231 ~ 25333857 (+)
LOC110501614 ox2g coding upstream 175186 25193435 ~ 25223476 (+)
LOC110501611 pdzd1 coding upstream 235823 25155097 ~ 25162839 (+)
LOC110501609 fam155a coding upstream 390269 24848514 ~ 25013655 (+)
LOC110501605 LOC106582130 coding upstream 975595 24394068 ~ 24423067 (+)
LOC110502118 LOC106582051 coding downstream 118048 25564668 ~ 25587687 (+)
LOC110501624 LOC106582115 coding downstream 172558 25619178 ~ 25651263 (+)
LOC110501626 LOC106582114 coding downstream 229417 25676037 ~ 25695731 (+)
LOC110501629 ppa6 coding downstream 256276 25702896 ~ 25708893 (+)
LOC110501634 LOC106582107 coding downstream 461223 25907843 ~ 25914106 (+)
G1792647 NA non-coding upstream 37156 25344679 ~ 25361506 (+)
G1792652 LOC106582122 non-coding upstream 89607 25307960 ~ 25309055 (+)
G1792653 NA non-coding upstream 91750 25303526 ~ 25306912 (+)
G1792294 NA non-coding upstream 206876 25191546 ~ 25191786 (+)
G1792290 NA non-coding upstream 211454 25187004 ~ 25187208 (+)
G1792941 NA non-coding downstream 99251 25545871 ~ 25546074 (+)
G1792979 NA non-coding downstream 155181 25601801 ~ 25644871 (+)
G1793014 NA non-coding downstream 205747 25652367 ~ 25652905 (+)
G1793018 NA non-coding downstream 212574 25659194 ~ 25659418 (+)
G1793021 NA non-coding downstream 215363 25661983 ~ 25662213 (+)
G1792649 NA other upstream 102105 25294546 ~ 25296557 (+)
G1792040 NA other upstream 555377 24842942 ~ 24843285 (+)
G1790805 NA other upstream 1279187 24118562 ~ 24119475 (+)
G1793045 NA other downstream 284706 25731326 ~ 25731754 (+)
G1793717 NA other downstream 869206 26315826 ~ 26316243 (+)
G1795411 NA other downstream 2456962 27898367 ~ 27912875 (+)
LOC110501693 LOC106582057 other downstream 2590308 28036917 ~ 28052019 (+)
G1795550 NA other downstream 2644945 28091565 ~ 28092116 (+)

Expression


Co-expression Network